New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3690007	222 (1.100)	2 (0.010)	2/190	32.0	0.01	coding (989/1656 nt)	fliF	flagellar M‑ring protein FliF
	?	NC_014034	= 3720532	198 (0.930)					coding (1174/1443 nt)	RCAP_rcc03511	HemY domain‑containing protein
Rejected: Position hash score below cutoff.

CGTCGGTGCGCGGGGTGATCGCCGTGACGCCATTCGCGTCCTTGCCCTCGACCCCGTCGACCAGAACGGCAACGGTCAGGCGCTTGATGTCGCCCGGATTGCGCA....................................................................................................  >  NC_014034/3689903‑3690007 ....................................................................................................GCGCACCACCGCGTCATCCTCGCCCTCGCCGCGTTCGATCGCCGCCATCAGCGTCAGCACGCGCGAGGTCGGGTTCGCCTCGACCAGATTGCCCAGCGCCCGCCG  <  NC_014034/3720532‑3720433                                                                                                                                                                                                                                                    GTCCTTGCCCTCGACCCCGTCGACCAGAACGGCAACGGTCAGGCGCTTGATGTCGCCCGGATTGCGCACCACCGCGTCATCCTCGCCCTCGCCGCGTTCGA                                                                     >  1:3327693/1‑101 (MQ=255)                                                         TCGACCAGAACGGCAACGGTCAGGCGCTTGATGTCGCCCGGATTGCGCACCACCGCGTCATCCTCGCCCTCGCCGCGTTCGATCGCCGCCATCAGCGTCAG                                                  <  2:3327452/101‑1 (MQ=255)                                                                                                                                                                                                               CGTCGGTGCGCGGGGTGATCGCCGTGACGCCATTCGCGTCCTTGCCCTCGACCCCGTCGACCAGAACGGCAACGGTCAGGCGCTTGATGTCGCCCGGATTGCGCA....................................................................................................  >  NC_014034/3689903‑3690007 ....................................................................................................GCGCACCACCGCGTCATCCTCGCCCTCGCCGCGTTCGATCGCCGCCATCAGCGTCAGCACGCGCGAGGTCGGGTTCGCCTCGACCAGATTGCCCAGCGCCCGCCG  <  NC_014034/3720532‑3720433 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG