New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	408396 =	201 (0.960)	13 (0.060)	3/198	31.5	0.08	intergenic (+14/+134)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	1640007 =	81 (0.380)					intergenic (+87/‑58)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG...................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  NC_014034/1640007‑1640105                                                                                                                                                                                                                                                                                                gggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                 >  2:3486806/10‑101 (MQ=1)                                                                                       ggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                >  2:853025/9‑101 (MQ=1)                                                                                        gggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA               >  2:2196054/8‑101 (MQ=1)                                                                                        gggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA               >  2:2985159/8‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC           >  1:3313296/4‑101 (MQ=1)                                                                                             cgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC          >  2:1975314/3‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGGCG         >  2:3565146/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG         >  2:1130248/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG         >  2:4049892/2‑101 (MQ=1)                                                                                                 GGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGA      >  2:2053851/1‑101 (MQ=1)                                                                                                    CAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCG   >  2:306223/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  1:2273980/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  2:4070547/1‑101 (MQ=1)                                                                                                                                                                                                           CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG...................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  NC_014034/1640007‑1640105 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG