New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	45 (0.220)	33 (0.160)	12/194	23.8	0.42	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	48 (0.230)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539                                                                                                                                                                                                                GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGG                                                                                                     <  2:2439823/101‑1 (MQ=1)       GCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCT                                                                                                  <  1:3550256/101‑1 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGGTCC                                                                                                >  1:4109606/1‑101 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                <  1:1672105/101‑1 (MQ=1)           ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGCggcgc                                                                                              >  2:4099821/1‑96 (MQ=0)            CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCC                                                                                             <  1:2411725/101‑1 (MQ=1)              CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                           <  2:575608/101‑1 (MQ=1)              CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                           <  1:3794147/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCATGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  1:3793557/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  1:168831/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGCTCCCCCCCC                                                                                          >  1:4055268/1‑101 (MQ=0)                AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCg                                                                                         <  2:1828391/101‑2 (MQ=11)                 GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGGGTCGCCCCCCc                                                                                        >  2:35998/1‑100 (MQ=0)                  CCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCgca                                                                                       <  2:714751/101‑4 (MQ=32)                     AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGGGACCCGCGGGGGCTCCGCCCCCgccccc                                                                                    >  1:2458450/1‑95 (MQ=12)                     AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCC.CACCC                                                                                   >  2:1119557/1‑101 (MQ=14)                     AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCC                                                                                   <  1:739799/101‑1 (MQ=34)                       GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  2:1990664/101‑1 (MQ=34)                        TTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGGCCCCCCCCCCCCC                                                                                 >  2:3822996/1‑101 (MQ=2)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  2:1200749/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  1:312978/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  2:3078946/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  1:1920306/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  2:51/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  1:1996818/101‑3 (MQ=37)                           CCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGC                                                                             <  2:1412420/101‑1 (MQ=25)                           CCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGC                                                                             <  1:3119374/101‑1 (MQ=25)                            CCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCCGGCG                                                                            >  2:4170081/1‑101 (MQ=1)                             CCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGT                                                                           <  1:1688636/101‑1 (MQ=18)                               CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCC.CACCCCCGCGCGTAT                                                                         >  2:378398/1‑101 (MQ=9)                               CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTAT                                                                         <  2:4155151/101‑1 (MQ=9)                                 CTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTT                                                                       <  2:1756563/101‑1 (MQ=9)                                  TGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTg                                                                      <  2:3529786/101‑2 (MQ=9)                                                                                                                                                                                                             CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG