New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392466	22 (0.110)	37 (0.190)	5/188	28.6	0.54	intergenic (‑114/+29)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 3701428	40 (0.190)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

TTGTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCC  >  NC_014034/392366‑392565                                                                                                            |                                                                                                      ttGTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.c...gg.c                                                                                                       >  2:1240050/1‑101 (MQ=255)  tGTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.c...gg.cg                                                                                                      >  1:2642247/1‑101 (MQ=255)   gTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.c...gg.cgg                                                                                                     >  1:3517381/1‑101 (MQ=255)      aCCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggg                                                                                                  >  2:1959911/1‑99 (MQ=255)          cgcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cgggggggcc                                                                                              >  2:156752/1‑95 (MQ=255)           gcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggggccgc                                                                                             >  2:2277071/1‑94 (MQ=255)           gcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggggccgc                                                                                             >  1:3166499/1‑94 (MQ=255)             aaGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cgggggggcgcgg                                                                                           >  2:570466/1‑92 (MQ=255)                acctgtggggccAAACCGGGAGGGAAATGGGCGGGCCTTTTCATTTTCCCTAAAATACCCGGGGGGCC.CGGGGGCGGACCCCC.C...GG.CGGGTCG.CCTCGgcg                                                                                        <  2:2779980/91‑1 (MQ=12)                         cccAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.GCCCGgcgcgccgcgggg                                                                              >  2:4065/1‑92 (MQ=18)                          caaaccc.GGAGGAAAAAGGGCAGCCCTTTTCATCTTGCCTAAAATACCCGGGGGGCC.GGGGGGCGGACCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCg                                                                             <  2:2736318/96‑1 (MQ=16)                                   gAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CCCCGGCGCGGCCGGgggggaaaaaac                                                                     >  1:2240591/1‑91 (MQ=18)                                    aGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CCCCGGCGCGGCCCCGGCGgaaaacaac                                                                    >  2:2111482/1‑95 (MQ=18)                                               cAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CGCCGGCGCCGCCGCGGCGGGAACAACTGCCGAACCtc.t                                                        >  2:15990/1‑101 (MQ=14)                                                         cATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.GCCCGGGGGCGCCCGGGGGGAAACACCTGGCCAACCTC.Tcccccccacc                                              >  1:3145008/1‑94 (MQ=2)                                                            cTTGCCCCAAAAGCCCCGGGGGGCGGGGGGGGGGCCCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCg                                            <  1:1251340/101‑1 (MQ=21)                                                            attctcgcAAAAATCCCGGGGGGG.GGGGGGGGGCGCCCC.CCCGGG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATc                                              <  1:1960037/94‑1 (MQ=16)                                                                    aaaTATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.CCCCGGGGCCGCCGAGGGGGAAAAAACTGCCGGACTTC.TCCCCCCAAACCCgccccccgc                                   >  1:4106576/1‑98 (MQ=9)                                                                      atatCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.GCCCGGCGCCGGCGGGGGGGAAACACCTTCCGCACTTCTTCCCCCAAACCAGCCCCCCggcc                                  >  2:3848414/1‑99 (MQ=2)                                                                           ccGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGGCCCCCGGGGCGCCCGGGGGGAAA.AACTTTCCGGACTTC.TTCCCCCAAACCCCCCGCCGGGCCcccgc                            >  1:2598675/1‑100 (MQ=0)                                                                             gggggCC.GGGGGGCCGCCCCCCGC...GGCCGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGt                            <  1:1618841/101‑1 (MQ=25)                                                                               gggTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.GCCCGGGGCAGGCGGGGGGGAAACACCTTCCGAACTTC.TCCCCCAAAACCCGCCCCCCGGCCcccgcccca                        >  1:1635740/1‑96 (MQ=9)                                                                                     cGGGGGCGGAGCCCC.C...GG.CGGGGCG.CCCCCGCGCCGCCCAGGCGAAAACACCTGCCCAACTTC.TCCCACAAAACCCGCCCCCCGGGCcgcggccaaccctc                   >  2:1832246/1‑91 (MQ=16)                                                                                        gggCGGAGCCCC.C...GG.CGGGGGG.CCCCCGCGCCGCCGCGGGGGAAACACCTGCCGAACTTC.TCCCCCACAACCCGCCCCCCGGCCCGCCCCCAAGCCTCGcc                >  2:36180/1‑100 (MQ=255)                                                                                        gggCGGAGCCCC.C...GG.CGGGGCG.GCCCGGCGCCGCCGCGGGGGAAAAACTTGCCGCACTTC.TCCCCCCAATACCGCCGCCGGCCCCCCGCCCAAGCCTCCct                >  2:3416779/1‑101 (MQ=255)                                                                                         gggcccccccc.g...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctc               <  2:3068219/94‑1 (MQ=255)                                                                                          ggggcccccc.g...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctct              <  2:2461004/95‑1 (MQ=255)                                                                                           cGGAGCCCC.C...GG.CGGGGCG.CCCCGGCGCAGCCCGGGCGGAAACAATTGCCGAACTTC.TCCCCCAAAACCCGCCCCCCGCCCCCCGCCCAACATTCCctctc             >  2:2059887/1‑100 (MQ=255)                                                                                                      ccggg.cggGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgc      <  1:3518922/98‑1 (MQ=255)                                                                                                          g.cggGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc  >  2:2445067/1‑101 (MQ=255)                                                                                                            |                                                                                                      TTGTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCC  >  NC_014034/392366‑392565 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG