| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,179 | A→T | 3.9% | intergenic (‑162/+130) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,179 | 0 | A→T | 3.9% | 4.1 ‑0.9 0.0 | 146 | intergenic (‑162/+130) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/1): ref base (83/56): total (89/57) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.04e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 196 total aligned reads displayed.
CGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAG > NC_014034/3068079‑3068279
|
cGATGGGCAGGCTGGCCGATGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCa < 1:2377050/101‑1 (MQ=255)
cGATGGGCAGGCGGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCa < 2:2030896/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt < 1:1533616/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt > 1:1475925/1‑101 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt > 2:2366800/1‑101 (MQ=255)
aggggCGGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1774654/99‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg > 2:2827143/1‑101 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1065946/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1729808/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGTCCCGCCCATggc < 1:2289102/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc < 1:122909/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc < 2:3984774/101‑1 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.g > 1:1920046/1‑101 (MQ=255)
gCAGGCTGACCGAGGCCATCGCCCAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gg > 2:744042/1‑101 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.ggg > 2:1167520/1‑101 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.ggg < 1:3509296/101‑1 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gggg > 2:2595586/1‑100 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gggc > 2:1473617/1‑101 (MQ=255)
ggCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.ggggg > 1:1984297/1‑99 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.Ctt < 2:3120389/101‑1 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCACGGC.GGggg.cgt > 2:2022118/1‑99 (MQ=255)
gACCGAGGCGATCGCCGAGGTCATGCGGACCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtc < 1:329548/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCAGGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtct < 2:4218580/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtctc > 2:3879033/1‑101 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtctc < 2:1065203/101‑1 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTcgc.c > 1:604899/1‑101 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTccc.c > 1:227116/1‑101 (MQ=255)
ccATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCCCCCCCCCCCTGGG.GGGCG.GGTCTcgc.cccc > 1:1173776/1‑99 (MQ=18)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTcgc.cc.g.cc < 2:2664845/101‑1 (MQ=255)
cGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCCC.CC.G.CCc.gg > 2:2306011/1‑101 (MQ=255)
gCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCCTGGC.GGGCG.CTTCTCGC.CC.C.CCg.ggg > 2:3830834/1‑101 (MQ=255)
ccGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGGG.CCTCTCCC.CC.C.CCG.gggc > 1:79698/1‑101 (MQ=18)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCCCCCATGGC.GGGCG.CTTCGCCC.CC.T.GCg.ggggg > 1:758458/1‑99 (MQ=17)
gAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.gggcgg < 1:2595777/101‑1 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.gggcgggc < 2:1833609/101‑1 (MQ=255)
gTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.Gggcgggcg < 2:2439155/101‑1 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGGG.CGTCTCCC.CC.G.CCC.gggcggggggc > 1:2080720/1‑97 (MQ=18)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGGcc > 2:3126655/1‑101 (MQ=255)
gcgcgaCAATGGCCCCGTGACCGGCGAGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGGGCCGGCCCCC.CC.G.CCG.GGGGGGGGGGCgg > 2:1595751/6‑101 (MQ=17)
gCGGACCAGTGGCCTCGTGCCCCCCGAGTGCCCAAAGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGc < 1:1685015/101‑1 (MQ=17)
cGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCCGcc > 2:1378869/1‑101 (MQ=255)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCC.GGGCGGGCGGCGGccc > 2:2425929/1‑100 (MQ=255)
acgggggCCTCGGGCCCGCCGAGGCCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCT.GGGCGGGCGCCGGCCTctg < 2:2195308/96‑1 (MQ=14)
acatggcccccGTGCCCGCGGAGGGCCAAAAGG.CCCTC.GGCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTctg < 2:898105/91‑1 (MQ=11)
aCAATGGCCCCGTGACCGGCGAGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGGG.C.GGGCGCGCC.G.CCG.GGGCGGGGGGCgggggcct > 1:1355827/1‑95 (MQ=17)
cAGTGCCCTCGGGCCCCCCGAGGCCCCAAGGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTctgc < 2:1016424/101‑1 (MQ=14)
tGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCtgctgc > 2:251806/1‑101 (MQ=255)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGTGCCGGCCCCCGCTTCGccc > 1:98066/1‑100 (MQ=14)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCCGCCTCTGCTGCGCC.t > 2:3459419/1‑101 (MQ=255)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CCTCTCGC.CC.G.CCG.GGGCGGGCGCCGGGCCCTGCTGCGCC.t > 2:533275/1‑101 (MQ=255)
cgggcccgccgGGGGCCCAAGGG.CCCTC.GGCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.Tgg < 2:4160271/96‑1 (MQ=14)
cGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.C.CCG.GGGGGGGGGCCGGCCTCTGCTGCGCC.Tgg > 2:2699520/1‑101 (MQ=255)
gTGACCGCCGGGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGCGGGGGG.CTTCGCG..CC.G.CCGCGGGCGGGGGGCGGCCGCCGCGgcgggtgg > 2:3553242/1‑96 (MQ=2)
tgcccgccgAGGGCCCAAGGG.CCCCC.GGCCGGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.Tgggg < 2:3292370/98‑1 (MQ=14)
ccgccgGGGGCCCAAAGG.CCCCC.GGCCAGGC.CCCGCCCCGCCCATGGC.GGGCC.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGaaa < 1:2784782/101‑1 (MQ=14)
cgccgAGGGCCCAAGGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAAc < 1:1826126/101‑1 (MQ=255)
cccccggggCCCAAACG.CCCCCGGGCCGGCC.CCCGCCCCGCCCTGGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGaaa < 2:1900966/95‑1 (MQ=14)
ggcggccccAAGGG.CCCCC.GGCAAGCC.CCCCCCCCGCCGATGGC.GGGCG.TTTCTGGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGt < 1:2389371/95‑1 (MQ=17)
cggggccccAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGt < 2:1096055/95‑1 (MQ=255)
cgAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGGCCGGCCTCTGCTGCGCC.CGGGGGAACggg > 1:1096149/1‑100 (MQ=255)
cgAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCCCTGCTGCGCC.TGGGGGAACggg > 1:1454992/1‑100 (MQ=255)
gAGGGCCCAAAGG.CCCTC.GGCGAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGNCCCGCCTCTGCTGCGGC.TGGGGGAACgggc > 1:2410580/1‑99 (MQ=14)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGGG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCCGCCGCGCC.TGGGGGAACgggc > 1:2479361/1‑99 (MQ=14)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc > 2:3358883/1‑101 (MQ=255)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGGAACGGTc > 1:4051850/1‑101 (MQ=255)
ggggCCCCAAGGCCCCCC.GCCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 1:2366976/100‑1 (MQ=17)
gaggCCCAAAGGCCCCTC.GGCCGGCC.CCCGNCCCGCCCAGGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 1:195563/99‑1 (MQ=17)
gaggCCCAAAGG.CCCCCGGGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 2:2545566/99‑1 (MQ=17)
gggCCCAAGGG.CCCCC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCtt < 2:2006297/101‑1 (MQ=255)
gggCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGCG.CGGTCCGC.CCGG.CCC.GGGCGGGGGGGGGCCCCCGCCGTGCCTTGGGGGAACgggc > 1:1114979/1‑99 (MQ=2)
ggCCCAAGGG.CCCTC.GGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTg < 1:3459671/101‑1 (MQ=255)
ggCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGCC.CTGGCCGC.GC.GCCCG.GGGGGGGCGCCCGCCCCTTCTCCCGC.Tggggtgatcgggtc > 2:2935939/1‑91 (MQ=2)
gccccAAAGC.CCCTC.GGCCGGCC.CCCCCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCCGCTGCGCC.TGGGGAAACGGTCTTg < 1:3696279/99‑1 (MQ=18)
gccAAAGT.CCCCT.GGCCCGCCCCCCGCCCCGCCCATGGC.GGGCG.CTTCGCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTgg < 2:4130183/100‑1 (MQ=14)
agcgg.CCCCC.GGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCAcc < 1:4228933/98‑1 (MQ=18)
aggg.CCCTC.GGCCGGCC.CCCGCCCCGCCTATGGC.GGGCG.CTTCTCGC.CC.G.CGG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCg < 1:2532910/99‑1 (MQ=18)
aggccccTC.GGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CGG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCg < 1:4151015/97‑1 (MQ=18)
aGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.CGGGGAAACGGTCTTGGCCCCGc > 1:4187860/1‑101 (MQ=255)
g.CCCTC.GCCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGccc < 2:2146985/101‑1 (MQ=255)
c.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGGCCGGCCCCCGCTGCGCC.TGGGGGAACGGGCTTGGCACCGCCCGGGcc > 1:2878136/1‑100 (MQ=18)
c.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGAACCCGCCTCTGCGGCGGC.TGGGGAAAAGGTGTTGGCACCCCCCGGGcc > 1:4005573/1‑100 (MQ=18)
ggCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGGAACGGTCTTGGCACCGCCCGGGCTc > 1:2390801/1‑101 (MQ=255)
ggCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTc > 2:3260323/1‑101 (MQ=255)
gccccgcccccgccccgcCCAGGGC.GGGCG.TTTCCGGC.CC.G.CGG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTc < 1:3879292/93‑1 (MQ=18)
ccAGCG.CCCCCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CGG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCcg < 2:1355698/101‑1 (MQ=255)
cAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGGGCCGGCCTCTGCTGCGCC.CGGGGGAACGGGCTTGGCACCGCCCGGGCTCcgg > 1:2984749/1‑101 (MQ=21)
cAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg > 1:1311981/1‑101 (MQ=255)
gcg.cCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCcggcg > 2:2786053/1‑101 (MQ=255)
g.cccgcccCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAANCGGTCTTGGCACCGCCCGGGCTCCggcggg > 1:1057335/1‑101 (MQ=255)
ccccccgcccCTGGC.GGCCG.CTTCGCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGgcgggcgg < 1:3193197/99‑1 (MQ=255)
ccccccgcccAGGGG.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGgcgggcgg < 1:2727216/99‑1 (MQ=255)
ccccccgcccAGGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACCGTCTTGGCACCGCCCGGGCTCCGgcgggcgg < 1:3773571/99‑1 (MQ=255)
ccggcccATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGa < 1:711033/98‑1 (MQ=255)
cccgcccAGGGG.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGa < 2:2684698/101‑1 (MQ=255)
ccgcccGTGGC.GGGCG.TTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaa < 2:565013/101‑1 (MQ=255)
ccgcccATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCCGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaa > 1:3964315/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGc > 1:1381241/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAAGc > 2:2823067/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGGCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAGGc > 1:1493012/1‑101 (MQ=255)
aTGGC.GCGCG.CTTCTCGC.GC.G.CCC.GGGCGGCGACCGGGCCTTGTTGCACC.TGGGGTAACGGTCTTTGCGCCCCCTAGGCTCCGGCGGGCggggccagctag > 2:685563/1‑93 (MQ=255)
|
CGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCG.GGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAG > NC_014034/3068079‑3068279
Base quality scores:
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|