| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,180 | T→C | 3.5% | intergenic (‑163/+129) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,180 | 0 | T→C | 3.5% | 4.4 ‑1.9 ‑0.6 | 143 | intergenic (‑163/+129) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/0): ref base (82/55): total (87/56) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.56e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.63e-01 | ||||||||||
Only 100 of 196 total aligned reads displayed.
GATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGT > NC_014034/3068080‑3068280
|
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt < 1:1533616/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt > 1:1475925/1‑101 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCAt > 2:2366800/1‑101 (MQ=255)
aggggCGGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1774654/99‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1729808/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 2:1111439/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg < 1:1065946/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATg > 2:2827143/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGTCCCGCCCATggc < 1:2289102/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc < 1:122909/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc < 2:3984774/101‑1 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.g > 1:1920046/1‑101 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.g > 2:3773314/1‑101 (MQ=255)
gCAGGCTGACCGAGGCCATCGCCCAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gg > 2:744042/1‑101 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gggg > 2:2595586/1‑100 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gggc > 2:1473617/1‑101 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.gggc > 2:1373872/1‑101 (MQ=255)
ggCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATggc.ggggg > 1:1984297/1‑99 (MQ=255)
gCTGACCGAGGCCATCGCCGAGGTCATGCGGAATAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGgcg.c < 1:3606332/101‑1 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.Ctt < 2:3120389/101‑1 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCACGGC.GGggg.cgt > 2:2022118/1‑99 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtct < 1:3868690/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCAGGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtct < 2:4218580/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtctc > 1:904195/1‑101 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACATCAGCCCGGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTtctcc > 1:3292611/1‑100 (MQ=11)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTcgc.c > 1:604899/1‑101 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTccc.c > 1:227116/1‑101 (MQ=255)
ccATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCCCCCCCCCCCTGGG.GGGCG.GGTCTcgc.cccc > 1:1173776/1‑99 (MQ=18)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTcgc.cc.g.cc < 2:2664845/101‑1 (MQ=255)
cGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCCC.CC.G.CCcgg > 2:2306011/1‑101 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCCCCCATGGC.GGGCG.CTTCGCCC.CC.T.GCgggggg > 1:758458/1‑99 (MQ=17)
aGGTCATGCGGACCAGAAGTCCCGTGACCGCCGGGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGCGGGGGG.CGCCGCGC.CC.C.CCGgggcgg > 1:3707408/1‑101 (MQ=18)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGgggcgggc < 2:1833609/101‑1 (MQ=255)
gTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGggcgggcg < 2:2439155/101‑1 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGGG.CGTCTCCC.CC.G.CCCgggcggggggc > 1:2080720/1‑97 (MQ=18)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGcc > 2:3126655/1‑101 (MQ=255)
aTGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGCCg > 1:2382047/1‑101 (MQ=255)
gcgcgaCAATGGCCCCGTGACCGGCGAGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGGGCCGGCCCCC.CC.G.CCGGGGGGGGGGGCgg > 2:1595751/6‑101 (MQ=17)
gCGGACCAGTGGCCTCGTGCCCCCCGAGTGCCCAAAGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGc < 1:1685015/101‑1 (MQ=17)
gCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGG.CC.G.CCGGGGGGGGCGCCgga > 2:1235606/1‑100 (MQ=255)
cGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCCGcc > 2:1378869/1‑101 (MQ=255)
cGGAACAGTGCCCTCGTGACCGCCGAGGGCCGAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGcc < 1:3462105/101‑1 (MQ=255)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCCGGGCGGGCGGCGGccc > 2:2425929/1‑100 (MQ=255)
acgggggCCTCGGGCCCGCCGAGGCCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCTGGGCGGGCGCCGGCCTctg < 2:2195308/96‑1 (MQ=14)
acatggcccccGTGCCCGCGGAGGGCCAAAAGG.CCCTC.GGCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTctg < 2:898105/91‑1 (MQ=11)
aCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGCCGGCCTctg > 2:1095190/1‑101 (MQ=255)
aCAATGGCCCCGTGACCGGCGAGGGCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGGG.C.GGGCGCGCC.G.CCGGGGCGGGGGGCgggggcct > 1:1355827/1‑95 (MQ=17)
cAGTGGCCTCGTGACCGCCGAAGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCCC.CC.C.CCGGGGGGGGGGcccggccccgc > 1:2402932/1‑92 (MQ=14)
cAGTGCCCTCGGGCCCCCCGAGGCCCCAAGGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTctgc < 2:1016424/101‑1 (MQ=14)
tGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCtgctgc > 2:251806/1‑101 (MQ=255)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGTGCCGGCCCCCGCTTCGccc > 1:98066/1‑100 (MQ=14)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCCGCCTCTGCTGCGCC.t > 2:3459419/1‑101 (MQ=255)
cTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CCTCTCGC.CC.G.CCGGGGCGGGCGCCGGGCCCTGCTGCGCC.t > 2:533275/1‑101 (MQ=255)
cgggcccgccgGGGGCCCAAGGG.CCCTC.GGCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.Tgg < 2:4160271/96‑1 (MQ=14)
cGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.C.CCGGGGGGGGGGCCGGCCTCTGCTGCGCC.Tgg > 2:2699520/1‑101 (MQ=255)
tgcccgccgAGGGCCCAAGGG.CCCCC.GGCCGGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.Tgggg < 2:3292370/98‑1 (MQ=14)
tGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CGTCTCGC.CC.C.CCGGGGGGGGGGCCCGGCTCTGCCGCGGC.Cgggg > 2:2685478/1‑101 (MQ=14)
ccgcggGGGCCCCAAGGC.CCCTG.GGCCCGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCCC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGaaa < 1:2903314/101‑1 (MQ=14)
ccgccgGGGGCCCAAAGG.CCCCC.GGCCAGGC.CCCGCCCCGCCCATGGC.GGGCC.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGaaa < 1:2784782/101‑1 (MQ=14)
cgccgAGGGCCCAAGGC.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAAc < 1:1826126/101‑1 (MQ=255)
cccccggggCCCAAACG.CCCCCGGGCCGGCC.CCCGCCCCGCCCTGGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGaaa < 2:1900966/95‑1 (MQ=14)
cgAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGCCGGCCTCTGCTGCGCC.CGGGGGAACggg > 1:1096149/1‑100 (MQ=255)
cgAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCCCTGCTGCGCC.TGGGGGAACggg > 1:1454992/1‑100 (MQ=255)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc > 2:3358883/1‑101 (MQ=255)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGGAACGGTc > 1:4051850/1‑101 (MQ=255)
gAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCCCTGCTGCGCC.CGGGGGAACgggc > 1:2987262/1‑99 (MQ=255)
ggggCCCCAAGGCCCCCC.GCCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 1:2366976/100‑1 (MQ=17)
gaggCCCAAAGGCCCCTC.GGCCGGCC.CCCGNCCCGCCCAGGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 1:195563/99‑1 (MQ=17)
gaggCCCAAAGG.CCCCCGGGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTc < 2:2545566/99‑1 (MQ=17)
aGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGGAACGGGCt > 1:2505581/1‑101 (MQ=255)
gggCCCAAGGG.CCCCC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCtt < 2:2006297/101‑1 (MQ=255)
gggCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGCG.CGGTCCGC.CCGG.CCCGGGCGGGGGGGGGCCCCCGCCGTGCCTTGGGGGAACgggc > 1:1114979/1‑99 (MQ=2)
ggCCCAAAGG.CCCTC.GGCCTGCG.CCCGCCCCGCCATCGGC.GGGCC.CTGGCCGC.GC.GCCCGGGGGGGGCGCCCGCCCCTTCTCCCGC.Tggggtgatcgggtc > 2:2935939/1‑91 (MQ=2)
gccAAAGT.CCCCT.GGCCCGCCCCCCGCCCCGCCCATGGC.GGGCG.CTTCGCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTgg < 2:4130183/100‑1 (MQ=14)
agcgg.CCCCC.GGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCAcc < 1:4228933/98‑1 (MQ=18)
aaGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCCC.CC.G.CCCGGGCGGGGGGCCGCCTCTGCTGCGGC.TTGGGGAACGGGCTTGGCACCg > 2:3871726/1‑101 (MQ=17)
aggccccTC.GGCCGGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CGGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCg < 1:4151015/97‑1 (MQ=18)
aGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.CGGGGAAACGGTCTTGGCCCCGc > 1:4187860/1‑101 (MQ=255)
g.CCCTC.GCCCAGCC.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGccc < 2:2146985/101‑1 (MQ=255)
c.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGGGCCGGCCCCCGCTGCGCC.TGGGGGAACGGGCTTGGCACCGCCCGGGcc > 1:2878136/1‑100 (MQ=18)
c.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGAACCCGCCTCTGCGGCGGC.TGGGGAAAAGGTGTTGGCACCCCCCGGGcc > 1:4005573/1‑100 (MQ=18)
ggCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGGAACGGTCTTGGCACCGCCCGGGCTc > 1:2390801/1‑101 (MQ=255)
ggCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTc > 2:3260323/1‑101 (MQ=255)
cAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg > 1:1311981/1‑101 (MQ=255)
gcg.cCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCcggcg > 2:2786053/1‑101 (MQ=255)
g.cccgcccCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAANCGGTCTTGGCACCGCCCGGGCTCCggcggg > 1:1057335/1‑101 (MQ=255)
g.cccgcccCGCCCATGGC.GGGCG.CTTCTCCC.CC.G.CCGGGGCGGGCGGCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCCCCGCCCGGGCTCCggcggg > 2:3535763/1‑101 (MQ=255)
ccccccgcccAGGGG.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGgcgggcgg < 1:2727216/99‑1 (MQ=255)
gccccgcccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGcgggcggg > 1:257813/1‑101 (MQ=255)
ccggcccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGa < 1:711033/98‑1 (MQ=255)
ccgcccGTGGC.GGGCG.TTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaa < 2:565013/101‑1 (MQ=255)
ccgcccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCCGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGaa > 1:3964315/1‑101 (MQ=255)
gcccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAg > 1:3348522/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGc > 1:1381241/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAAGc > 2:2823067/1‑101 (MQ=255)
ccATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGGCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGGAAGGc > 1:1493012/1‑101 (MQ=255)
ccAGGGC.GGGCG.CTTCTCGC.CC.G.CGGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGc < 1:2450913/101‑1 (MQ=255)
gtGGC.GGGCT.CTCCTCGC.CC.G.GCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAg < 2:2080582/100‑1 (MQ=255)
aTGGC.GCGCG.CTTCTCGC.GC.G.CCCGGGCGGCGACCGGGCCTTGTTGCACC.TGGGGTAACGGTCTTTGCGCCCCCTAGGCTCCGGCGGGCggggccagctag > 2:685563/1‑93 (MQ=255)
tGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAgg > 2:3920689/1‑100 (MQ=255)
|
GATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTC.GGCCAGCG.CCCGCCCCGCCCATGGC.GGGCG.CTTCTCGC.CC.G.CCGGGGCGGGCGCCGGCCTCTGCTGCGCC.TGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGT > NC_014034/3068080‑3068280
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|