| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,575,638 | 5 bp→GGGGC | 100% | intergenic (+40/+129) | corA → / ← RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,575,638 | 0 | C→G | 100.0% | 69.3 | 20 | intergenic (+40/+133) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,639 | 0 | C→G | 100.0% | 66.4 | 20 | intergenic (+41/+132) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,640 | 0 | A→G | 100.0% | 69.1 | 20 | intergenic (+42/+131) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,641 | 0 | T→G | 100.0% | 60.3 | 20 | intergenic (+43/+130) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/1): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,642 | 0 | T→C | 100.0% | 64.0 | 20 | intergenic (+44/+129) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
CTGATGGTGGCCTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGCCATTTG.CGGCG.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGCCG > NC_014034/1575539‑1575725
|||||
ctgATGGTGGCCTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGGCCCCCCGCGGCCCCGGGGGCCCGGAAAGCGGc > 2:859606/1‑101 (MQ=255)
tGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCt < 2:28586/101‑1 (MQ=37)
gggCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTg < 2:239518/101‑1 (MQ=37)
cttctcCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCggg < 2:4059490/101‑1 (MQ=25)
tcttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCggggg < 1:859687/101‑1 (MQ=37)
cttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGa < 2:1154163/101‑1 (MQ=37)
tcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACg < 1:2175676/101‑1 (MQ=37)
aTGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGt < 1:1541505/101‑1 (MQ=37)
ggAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTcc < 1:3005550/101‑1 (MQ=37)
aGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGTGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTccccc < 2:3267184/101‑1 (MQ=255)
ggACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCcg < 2:3468007/101‑1 (MQ=37)
ggCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCcgtaccc < 2:3581965/101‑6 (MQ=25)
ttAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCtt < 2:52729/101‑1 (MQ=37)
ttAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCtt < 1:3877781/101‑1 (MQ=37)
tAGGGCTGGCGCCCTCGCGCGG.CTCGGGCGCGCGGACCGCGGGGGTCTGCCTCCC.CCCGCGCCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTg < 2:1508214/101‑1 (MQ=255)
cTCGCGCGG.CTCGGGCGCCGGGAACGCGGGGGTCTGCCTCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCa < 1:2783537/101‑1 (MQ=255)
ccgcgcgG.CTCGGGCGCGCGGACCGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaa < 1:575010/100‑1 (MQ=25)
gcgcgG.CTCGGGCGCCCGGAACGCGGGGGGCTGCCCCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaaga < 1:2964439/101‑1 (MQ=25)
gcGGGCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAAcc < 2:4075445/100‑1 (MQ=25)
ggCGCCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCt < 1:3781175/101‑1 (MQ=37)
gcgcCCGGAACGCGGGGGGCTGCCGCCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTg < 1:3220550/101‑1 (MQ=37)
cgcCCGGAACGCGGGGGGCTG.CCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGc < 2:3043243/101‑1 (MQ=37)
gcCCGGAACGCGGGGGGCTG.CCGCC.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGCCg < 1:3485560/101‑1 (MQ=38)
|||||
CTGATGGTGGCCTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGG.CTCGGGCGCCCGGAACGCGGCCATTTG.CGGCG.CCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTGCCG > NC_014034/1575539‑1575725
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|