| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,721,519 | +GG | 100% | intergenic (‑414/+32) | RCAP_rcc01588 ← / ← RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,721,519 | 1 | .→G | 100.0% | 50.3 | 18 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (7/11): ref base (0/0): total (7/11) | ||||||||||
| * | NC_014034 | 1,721,519 | 2 | .→G | 100.0% | 50.7 | 18 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (7/11): ref base (0/0): total (7/11) | ||||||||||
GGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC > NC_014034/1721422‑1721605
||
ggTTCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..cgg > 1:3817103/1‑101 (MQ=255)
ccAAATAACGCGCTGCGGGCCTCCCTCCCGGAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACccgccccgcgcg > 1:4146586/1‑94 (MQ=255)
ccAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACccgcccaggcgg > 2:859913/1‑94 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..gggggggg > 2:2551194/1‑96 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..gggggggg > 1:1281376/1‑96 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..gggggctgc > 2:727082/1‑95 (MQ=255)
aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACccgcccccggggggg > 2:1710461/1‑91 (MQ=255)
aTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..cgggggggggc > 2:1175848/1‑93 (MQ=255)
ggCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCCCCGGcccccc > 2:4224993/1‑101 (MQ=25)
gccccccctcccGCTGCTTTTTTTTTTGGGCGGGTCGCGTGGGGGTTTC.CGCCGGGGCGGCGCGGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGAcccccc < 1:1542242/96‑1 (MQ=255)
cccccccGCCGTGTTTTTTTTGTGGCGGGTCGCTTGGGGGTTTC.CGCCTCGGCGGCGCGGGGG.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGaa < 2:3816818/101‑1 (MQ=9)
ctcccGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCCGGGGGGGGCGCCCCCCGGcccccccccccaa > 2:557102/1‑96 (MQ=21)
cGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCCCCGGccccccccccagaaccc > 1:1347017/1‑92 (MQ=18)
ttttttTTTTTGGGCGGGTCGCGTGGGGGTTTC.CCCCCGGGCCGCCCCGAGG.CGCCCCGCCGGGGGCTGCGCCCCCGGA.CCCCCCCGAAGATCTCAGATCa < 1:2732696/98‑1 (MQ=255)
gtttttTTTTTTTGGCGGTCCCCGTGGGGGTTTCCGCCCCGGCGGCCCCGGGC.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGAt < 2:3580995/98‑1 (MQ=255)
tttttTTTTTTGGCGGGTCGCCGGGGGGTTCC.CCCCCCGGCGCCCCCGAGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCa < 1:370232/99‑1 (MQ=12)
gcTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACACGCCGGGGGGTGCGCCCCCGGAGCCCCCCCCAAGAACTCACATcc > 2:4326990/1‑100 (MQ=18)
tttttttGGCCGGTCCCTGTGGGGTTTC.CGCCCCGGCGGCGCCGGGG.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCtt < 1:783133/99‑1 (MQ=255)
ttttttgGGGCGGGCGCCTTGGGGTTTTCCCCCGCGGCGCCGCCGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCt < 1:3820537/99‑1 (MQ=12)
tttggggCCGGCCG.CTTGGGGTTTTCCCCCGCGGCGGCCCGGGGG.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGa < 1:2495366/96‑1 (MQ=12)
ttttGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCCGGGGGCGGCGCCCCCGGACGCCCCCCCACAATCTCACGACACCCTGAc > 2:1566460/1‑101 (MQ=17)
ggCCGGCGGGCTTGGGGGTTT.CGCCCCGGGGCCCCCGGGGCCCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTg < 2:4586876/101‑1 (MQ=255)
cgggcgctggggggTTTT.CGCCGGGGCCGCCCCGGGC.CCCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTg < 1:2224337/91‑1 (MQ=255)
t.CGCCTCGGCTGCGCCGAGG.CGACCCGCCGGGGGGTGCGCCCCCCGGCCCCCCCCCCAAAGCTCCGATACCCTTTACCCGCGCGCCGGCCCGGCCGAGCgg > 2:2159063/1‑101 (MQ=2)
cGGCTGCGCCGAGG.CGACCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGCAGATCTCAGATCACCTTGACCCGCGTGCCGACCGGGCAGAGCGGACaaaa > 2:1356187/1‑100 (MQ=25)
tGCGCCGAGG.CGACCCGCCGGGGGCTGCCCCCCCGGACCCCCCCCCACGATCTCAGATCCCCCTGACCTGCGCGCCGGCCGGGCAGAGCGGATAAAATTcc > 2:1349236/1‑101 (MQ=21)
gggg.CGCCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGAcc < 1:2551368/99‑1 (MQ=255)
||
GGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGG.CGACCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC > NC_014034/1721422‑1721605
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
|