Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 2,185,930 | +C | 88.0% | intergenic (+203/‑302) | mtlK → / → RCAP_rcc02028 | mannitol 2‑dehydrogenase/FeoA family protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 2,185,930 | 1 | .→C | 88.0% | 14.4 ‑0.4 ‑0.3 | 50 | intergenic (+203/‑302) | mtlK/RCAP_rcc02028 | mannitol 2‑dehydrogenase/FeoA family protein |
Reads supporting (aligned to +/- strand): new base (22/21): ref base (2/4): total (24/26) | ||||||||||
Fisher's exact test strand distribution p-value = 6.67e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.02e-01 |
TGCGGGGGCTCCG.CCCCGCACCCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCGCCGGGTC > NC_014034/2185829‑2185986
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tGCGGGGGCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCg < 2:1605340/101‑1 (MQ=37)
gCGGGGGCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCCAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.c > 2:3681964/1‑101 (MQ=25)
cGGGGGCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cc > 1:1677143/1‑101 (MQ=37)
ggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACCAGAAACGCCGAA.CCC.cccc > 1:1312641/1‑101 (MQ=25)
ggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cccc < 1:2813353/101‑1 (MQ=37)
gCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCctt < 1:2590385/101‑1 (MQ=37)
gCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCctt < 1:1843519/101‑1 (MQ=37)
gCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCctt < 2:502260/101‑1 (MQ=37)
cTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCcttt < 1:1488086/101‑2 (MQ=37)
tccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCctttc > 1:2330710/6‑99 (MQ=37)
ccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCa < 2:2213473/97‑1 (MQ=37)
ccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCctttcc > 1:1797228/5‑98 (MQ=38)
gcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCAcc < 1:4220803/99‑1 (MQ=38)
cccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCt < 2:4541455/100‑1 (MQ=38)
cccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCt < 2:3119675/100‑1 (MQ=38)
gcacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCt > 1:4280145/4‑101 (MQ=39)
gcacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCt > 2:3813176/4‑101 (MQ=255)
cacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTc < 1:213107/99‑1 (MQ=39)
cacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGACCCCTTTCACCTTGGCTc < 1:940393/99‑1 (MQ=39)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCaaa > 2:4566712/1‑101 (MQ=255)
cccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAat < 2:3170923/101‑1 (MQ=255)
cccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAat < 1:503206/101‑1 (MQ=255)
cccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAat < 1:3778738/101‑1 (MQ=255)
ccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAata < 2:2330548/101‑1 (MQ=255)
ccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTT.TTTTTGATGGCACAAGAAACGCCGAACCCC.CCCCTTTCACCTTGGCTCAAata > 1:2166800/1‑101 (MQ=255)
ggCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAACTATc > 1:2229733/1‑101 (MQ=255)
ggCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATc < 2:2453051/101‑1 (MQ=255)
ggCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATc < 1:1089342/101‑1 (MQ=255)
cGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAATAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATccc < 1:2859911/101‑1 (MQ=255)
cGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATccc < 2:2846664/101‑1 (MQ=255)
cGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATccc > 1:838381/1‑101 (MQ=255)
gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCg > 2:2907970/1‑101 (MQ=255)
gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCg > 1:702103/1‑101 (MQ=255)
gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATACCg > 1:3275870/1‑101 (MQ=255)
tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCgg > 2:2570277/1‑101 (MQ=255)
tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCgggg < 1:3197724/101‑1 (MQ=255)
tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCgggg > 2:1593539/1‑101 (MQ=255)
aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTc < 1:3813461/101‑1 (MQ=255)
tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTcc > 2:2368700/1‑101 (MQ=255)
tCCAAAGAAAAAGCAGCGGCTTGCCCCGAAGGACTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTcc < 1:2685057/101‑1 (MQ=38)
cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCg < 2:1296528/101‑1 (MQ=255)
aGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCggggg > 1:2772505/1‑101 (MQ=255)
aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa > 2:3707582/1‑101 (MQ=255)
agcagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGc < 1:2119360/101‑1 (MQ=255)
gcagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcc < 1:1732596/101‑1 (MQ=255)
cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGccc > 2:2041401/1‑101 (MQ=255)
cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGccc > 1:828243/1‑101 (MQ=255)
cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGccc < 2:2675189/101‑1 (MQ=255)
gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGccccc > 1:1375967/1‑99 (MQ=37)
gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGccccc < 1:3682239/101‑3 (MQ=37)
cGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccg < 1:314406/101‑4 (MQ=37)
cGGCTTCCCCCGAAGGCC.TGTTTTTGATGCCAAAAGAAACGCGGAA.CCGCCCCCTTTCACCTTGGCCCAAATTCCCCGGGGGTCCGGGGGCGGAGcccccg < 2:1797309/101‑4 (MQ=18)
ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccgg > 1:4653522/1‑97 (MQ=25)
cTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccggcg > 2:1270081/1‑95 (MQ=25)
ttGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccggcgg > 1:2738581/1‑94 (MQ=25)
tGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccggcggg > 2:1105762/1‑93 (MQ=21)
tGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccggcggg > 1:3001391/1‑93 (MQ=21)
tGCCCCGAAGGCCTT.ATTTTGATGGCACAAGAAACGCCGAA.CCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGcccccggcggg > 1:3373897/1‑93 (MQ=21)
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TGCGGGGGCTCCG.CCCCGCACCCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAA.CCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCGCCGGGTC > NC_014034/2185829‑2185986
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 40 ≤
ATCG
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