Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,287,698 +G 40.0% intergenic (‑95/+140) RCAP_rcc02125 ← / ← acsA1 hypothetical protein/acetate‑‑CoA ligase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,287,6982.→G40.0% 2.7 0.0 0.05intergenic (‑95/+140)RCAP_rcc02125/acsA1hypothetical protein/acetate‑‑CoA ligase
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (3/0):  total (5/0)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

GGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGTTTCACACCCCCGCACCCCCGTGGCGTA.GTTGCGCCAGGAAAAAGCACAGACTTTTGCCCG  >  NC_014034/2287636‑2287764
                                                               |                                                                     
ggCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGGTTTTCCCCCCCCCCCCCCCCCGGCgggggtgc                               >  1:2767039/1‑94 (MQ=1)
              ggTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGGTTCACACCCCCCCCCCCCCCCGGGGGA.GGTTCGCCCGGgaaaaaaa                >  2:1057098/1‑98 (MQ=1)
                 ttGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGG.GGGGGTTTCCCCCCCCCCCCCCCCCCGGGCGGG.GGGGCCCCGGGaaaaaaaaa               >  1:173229/1‑97 (MQ=0)
                 ttGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCCGGGGGGGGTACACCCCCCCCCCCCCCCGCGGCGGG.GTGGCGCGGGAAAAAACca                >  1:166279/1‑101 (MQ=0)
                      cGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGGTTTACACCCCCCCCCCCCCCGGGGGGA.GGTGCGCCAGGGAAAAAcaacaacttt        >  2:439963/1‑93 (MQ=0)
                             ccccGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGGGGTTCACCCCCCCCCCCCCCCGGCGCAGGTTGTGCCGGGAAAAAGAAAAAACATTTTccct  >  2:3254663/1‑100 (MQ=0)
                                                               |                                                                     
GGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGC...GGGGGTTTCACACCCCCGCACCCCCGTGGCGTA.GTTGCGCCAGGAAAAAGCACAGACTTTTGCCCG  >  NC_014034/2287636‑2287764

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 23 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG