| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 904,934 | +GC | 100% | intergenic (+38/‑158) | RCAP_rcc00821 → / → murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 904,934 | 1 | .→G | 100.0% | 25.8 | 125 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (70/43): ref base (1/9): total (71/54) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.85e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.60e-01 | ||||||||||
| * | NC_014034 | 904,934 | 2 | .→C | 100.0% | 31.7 | 125 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (69/43): ref base (1/11): total (71/54) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.42e-04 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.11e-01 | ||||||||||
Only 100 of 132 total aligned reads displayed.
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTGGCT..GC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
||
gggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.CTTTGGCT..g > 1:1725835/1‑101 (MQ=255)
cTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgc < 1:1519883/101‑3 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGGCCCCCTC.TTTTGGCT..Gcgcc > 2:2663949/1‑98 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgcc > 2:3799087/1‑98 (MQ=255)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgccaaaa < 1:543397/101‑8 (MQ=37)
gTGCTGCGGTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgccaaaat < 1:3066743/101‑9 (MQ=25)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgccaaaat < 1:2864022/101‑9 (MQ=37)
gTGCGGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..Gcgccaaaat < 1:3475124/101‑9 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCa > 1:2996326/1‑101 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAc < 1:4189093/101‑1 (MQ=25)
ggcgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAc < 1:1592884/100‑1 (MQ=25)
gcgcTGGACGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAcc > 1:1330803/1‑101 (MQ=21)
cTGGCCGGTGCGGTGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAccccc > 1:3649430/1‑101 (MQ=21)
cTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CCAAATTCAccccc > 2:438510/1‑101 (MQ=21)
cTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAccccc > 2:116562/1‑101 (MQ=21)
tGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCAcccccc > 2:2118434/1‑101 (MQ=21)
gCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.gg > 1:1830108/1‑101 (MQ=21)
ccGGTGCGGCGGCTCTTTTCCGCGATGCTCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTGGCTTC.GC..CAAAATTCACCCCCC.GGc < 2:422682/101‑1 (MQ=18)
ccGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGc < 2:2845610/101‑1 (MQ=21)
gTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTa > 2:2064750/1‑101 (MQ=21)
gTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTa < 2:1854791/101‑1 (MQ=21)
cggcggCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTAttt > 1:2554385/1‑101 (MQ=21)
gcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCAcc > 1:55546/1‑101 (MQ=21)
gcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCAcc > 2:1479203/1‑101 (MQ=21)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAg > 2:4253125/1‑101 (MQ=21)
ctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAgg < 1:4432635/101‑1 (MQ=21)
ctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAgg < 1:2501909/101‑1 (MQ=21)
ttGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGaa > 1:1605012/1‑101 (MQ=21)
ttGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGaa < 2:2882401/101‑1 (MQ=21)
tGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGaaa > 2:4529002/1‑101 (MQ=21)
ccGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGACCCCCTCTTTGGGCTTC.GC..CAAAATTCACCCCCC.GGCGATTTTGCACCAGGagaaa > 1:3921020/1‑101 (MQ=17)
ccGCCATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGaaaaa < 1:3664159/101‑1 (MQ=18)
cgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGcc > 2:2801335/1‑101 (MQ=21)
cgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGcc > 2:3971655/1‑101 (MQ=21)
gATGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGccc < 1:3283003/101‑1 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCg > 1:2693186/1‑101 (MQ=21)
tGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCgg < 2:140051/101‑1 (MQ=21)
tGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCgg > 1:3447674/1‑101 (MQ=21)
tGCACCGGCGCGACTGAGGGCGGGGCAGAGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCgg > 1:2438607/1‑101 (MQ=21)
cccGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGt < 2:374482/100‑1 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc < 2:4456483/101‑1 (MQ=21)
gcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTcc > 2:147045/1‑101 (MQ=21)
gcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTcc > 2:1756770/1‑101 (MQ=21)
cgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.CGCGCATTTGCACCACGAAAAAGCCCGGCGTTTTTCCt > 1:7330/1‑101 (MQ=18)
cgACTGAGGGCGGCGCAGGAGGGCGCTGCCTCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCCTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCt < 1:440122/101‑1 (MQ=18)
gACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCACGGCGTTCTTCATg > 2:433502/1‑101 (MQ=18)
gACTGAGGGCGGGGCA.GGGGGCGCGGCCCCCCCCCTTTGGCCTC.GC..CAAAAATTCCCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTgg < 2:2221254/101‑1 (MQ=25)
aCTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGGAAAACGCCGGCGTTTTTCCTgg > 2:740969/1‑101 (MQ=18)
cttaGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt > 1:4615515/4‑101 (MQ=18)
tGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGGGC..CAAAATTCACCCCCC.GGCGTATTTGCACCACGAAAAAGCCCGGCGTTTTTCCTGGTc > 2:1522456/1‑101 (MQ=21)
gAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCg > 1:1305927/1‑101 (MQ=21)
gggCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.CGCGCCTTTGCACCAGGAAAAAGCCCGGCGCTTTTCCTGGTCGaa > 1:831130/1‑101 (MQ=18)
gggCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..GCGGCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGaa < 2:1757080/101‑1 (MQ=21)
cAGGGGGGCGCTTCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCg < 2:359727/101‑1 (MQ=21)
aGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg > 1:1769828/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg > 2:2368886/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg < 2:3233534/101‑1 (MQ=25)
ggggggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggg > 1:3325459/1‑101 (MQ=25)
ggggggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggg > 2:4305059/1‑101 (MQ=25)
gggggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgggg < 1:3349761/101‑1 (MQ=25)
ggggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggggg > 2:2125901/1‑101 (MQ=25)
ggggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACCCCggtcg > 1:2552987/1‑98 (MQ=21)
ggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGa > 1:3763516/1‑101 (MQ=25)
ggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGa < 1:3837191/101‑1 (MQ=25)
ggCGCTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGa < 1:3868298/101‑1 (MQ=25)
gcccTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTGCCCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAg < 1:4032029/98‑1 (MQ=21)
cgcTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGt > 2:110867/1‑101 (MQ=37)
cgcTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGt > 1:3426220/1‑101 (MQ=37)
gcTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc > 1:140895/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc > 2:2596578/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc > 1:2123970/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc < 2:1726491/101‑1 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc > 1:1080083/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGCAGTcc > 2:725131/1‑101 (MQ=25)
cTGCCCCCCT.ATTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCAACGGGAAAAAGAACGGCGTTNNNNNTGGTCGTAATACACCGGGGGGAggtc > 1:2393677/1‑98 (MQ=12)
tGCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCg > 1:39017/1‑101 (MQ=37)
gCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 2:1924402/1‑101 (MQ=37)
gCCCCCCTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGCCAAAAAACGCCGGGGGGGGTCCGc > 1:4033166/1‑101 (MQ=25)
ccccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt > 2:1549671/1‑101 (MQ=37)
ccccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt > 1:2051615/1‑101 (MQ=37)
ccccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt < 2:807826/101‑1 (MQ=37)
cccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:694534/101‑1 (MQ=37)
cccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:4526498/101‑1 (MQ=37)
cccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 2:1330710/101‑1 (MQ=37)
cccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:3799372/101‑1 (MQ=37)
ccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTg > 1:3595983/1‑101 (MQ=37)
ccccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGACCGCTTg < 2:444012/101‑1 (MQ=37)
cccTC.TTTTGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGc < 1:2745804/101‑1 (MQ=37)
ccttttttGGCC..GCCGCAAAATTCCCCCCCCGGGCTTTTTTCCACAAGAAAAAACCCGGGCGTTTTCCCTGGCCAAAATCCGCCGGGGGGAGTCCGCTTGc < 2:1604907/98‑1 (MQ=255)
ctgttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg < 1:2123661/98‑1 (MQ=38)
tcttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa < 1:2118584/99‑1 (MQ=37)
tcttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa > 2:3864476/3‑101 (MQ=37)
tcttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa > 1:2828849/3‑101 (MQ=37)
tcttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa > 1:3262243/3‑101 (MQ=37)
cttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:2277608/2‑101 (MQ=255)
cttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:1413104/2‑101 (MQ=255)
cttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:1260567/2‑101 (MQ=255)
cttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc < 2:2688617/100‑1 (MQ=255)
ttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 2:3545772/1‑101 (MQ=255)
ttttGGCTGCGC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 2:2012855/1‑101 (MQ=255)
||
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTGGCT..GC..CAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|