| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,849 | C→G | 14.6% | intergenic (‑273/‑130) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,849 | 0 | C→G | 14.6% | 9.2 ‑3.3 ‑0.0 | 48 | intergenic (‑273/‑130) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/7): ref base (18/23): total (18/30) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.56e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.72e-01 | ||||||||||
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCC....GT...C....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTT > NC_014034/1732749‑1732939
|
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGc < 2:3650977/101‑1 (MQ=255)
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGc > 2:2941807/1‑101 (MQ=255)
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGc > 2:2410506/1‑101 (MQ=255)
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGc > 1:3344194/1‑101 (MQ=255)
gCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCg < 2:886095/101‑1 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgg > 2:3845033/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgg > 2:2841205/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgg > 1:4515584/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgg > 1:551836/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgg > 2:1411593/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGAgg > 2:3931340/1‑101 (MQ=255)
gggACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggg > 2:2471737/1‑101 (MQ=255)
gggACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggg > 2:234130/1‑101 (MQ=255)
gACCGGGCCCCCCGGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggggg < 2:3836981/101‑1 (MQ=255)
gACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggggg > 1:4639247/1‑101 (MQ=255)
gACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggggg > 2:126881/1‑101 (MQ=255)
aCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgggggg > 2:213456/1‑101 (MQ=255)
aCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgggggg > 1:2753521/1‑101 (MQ=255)
aCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggcggg > 1:3060671/1‑101 (MQ=255)
cAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgggggggg > 2:17083/1‑99 (MQ=255)
cAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTg > 2:1285305/1‑101 (MQ=255)
cAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTg > 2:1108267/1‑101 (MQ=255)
aGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCggggggggg > 1:1021472/1‑98 (MQ=255)
aGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGa > 2:2131525/1‑101 (MQ=255)
aGGCCCCCCCGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGa < 1:3845318/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCgggggggggg > 2:4383692/1‑97 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGaa < 1:595074/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGaa < 1:1917170/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGaa < 1:801820/101‑1 (MQ=255)
gcccccCGCAGCCGCATGCCGTCCGCGTCAACATGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..c < 2:2290234/100‑1 (MQ=255)
cccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..cc < 2:3474848/101‑1 (MQ=255)
cccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG..cg > 2:1747849/1‑100 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..cccccc > 1:2041480/1‑101 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..cccccc < 2:852805/101‑1 (MQ=255)
acAGCCGCATGCCGTCCGCGTGAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG..GCGCCC....gc > 1:2639940/2‑100 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGACCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCC....gcg > 2:3573503/1‑99 (MQ=255)
ccGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCC....gcgggt < 1:788266/101‑6 (MQ=255)
cGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGC.GGGGGTGGAG..CCCCCC....gcggggcg > 2:1249094/1‑94 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG..gcccccccggggggg > 2:4429586/1‑92 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG..gccccccccgggggc > 2:562252/1‑92 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGAAG..CCCCCC....gcggggcgc > 2:1663018/1‑93 (MQ=255)
aaCAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGa < 1:3070274/101‑1 (MQ=21)
gCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.Ga < 1:3828337/101‑1 (MQ=21)
gCAAGGCCCCTGTTTTTCCCAGGGAAAATT.CCCCTTTTTTTTTTTGGGGGGGGGGGGGGGGGGCCC..CCCCCC....GG...CGGGTCGCCGCGGGCTTGCCCGAGGC.g < 2:2473163/101‑1 (MQ=2)
aaGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCC....GCGGGT....CGCCTCGGGCTTGCCCGAGGC.Gaaa < 2:625536/101‑1 (MQ=18)
agacccctGCTTTTCCTAGGAAAATGC.CGCCCTTTTTTC.TTTCGGGGGGGGCGGGGGTAAAG..CCCCCCCGCGGG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAg < 2:2041340/97‑1 (MQ=2)
cccGTTTTTCCCAGGCAAAATG.CGCCCTTCTTTCTTTTGGGGGGGGGGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTcc < 1:2131675/101‑1 (MQ=17)
cccGCTTTTCCTAGGCAAAATC.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTcc < 1:2819242/101‑1 (MQ=18)
gCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTccccc < 1:612871/101‑1 (MQ=21)
cTTTTCCTAGGCAAAATC.CGCCCTGCTTTCTTTGCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTcccccc < 2:2216636/101‑1 (MQ=17)
ccTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGaa < 2:3038981/101‑1 (MQ=21)
tAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGaaaa < 1:4631361/101‑1 (MQ=21)
tAGCCAAAATC.CGCCTTTTTTTCTTTGGGGGGGGGCGGGGGGTAAAC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGaaaa < 1:1388593/101‑1 (MQ=9)
caagCAAAATCCCGCCTTTTTTTCTTTGGGGGGGGGGGGGGGGTAACC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGaaa < 2:4139376/98‑1 (MQ=2)
ggCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAAcc < 1:2228877/101‑1 (MQ=21)
gaaaagTA.CCCCCTTCTTTCTTTCGGGGGGGGCGGGGGGTGAAC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCt < 2:2568441/99‑1 (MQ=17)
aaTA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGAAGGCCCCCCCG...GG...G....GGCCTCGGGGTTGGCCGCGGCGGGAGGCTCCCCCCCCTGAAAActcgcc > 2:3650040/1‑96 (MQ=255)
aTA.CGCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCt < 2:4638946/101‑1 (MQ=18)
atccGCCTTGCTTTCTTTGGGGGGGGGGGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCt < 2:4515289/98‑1 (MQ=9)
tccGCCTTTTTTTCTTTTGGGGGGGGGGGGGGGTGAGC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTg < 1:1265839/99‑1 (MQ=12)
ccTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcgc < 2:2866880/101‑1 (MQ=21)
ttctttttTTTGGGGGGGGGGGGGGGTAAAC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGt < 1:2787169/101‑1 (MQ=18)
tggggggggGGGGGGGGGAAC..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCt < 1:1178798/99‑1 (MQ=18)
gggggggggGGGGGGGTGACG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCt < 1:4502018/99‑1 (MQ=18)
ggggggggGGGGGGGTGAAG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCtt < 1:2841421/100‑1 (MQ=18)
gggggggGGGGGGGGGACG..CCCCCCGCG.GG...T....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 1:331732/101‑1 (MQ=18)
|
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATA.CGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG..CCCCCC....GT...C....CGCCTCGGGCTTGCCCGAGGC.GAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTT > NC_014034/1732749‑1732939
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|