Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,330,291 C→G 100% intergenic (+266/+46) RCAP_rcc02161 → / ← mrcA hypothetical protein/penicillin‑binding protein 1A

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,330,2910C→G100.0% 57.7 32intergenic (+266/+46)RCAP_rcc02161/mrcAhypothetical protein/penicillin‑binding protein 1A
Reads supporting (aligned to +/- strand):  new base (17/13):  ref base (0/2):  total (17/15)

CGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGG..G....G.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT  >  NC_014034/2330193‑2330372
                                                                                                  |                                                                                            
cGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggg                                                                                            <  1:311487/101‑1 (MQ=255)
  tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..g                                                                                        >  2:2523131/1‑101 (MQ=255)
    agtgggtcAAGAAAAAGCCGGGGCCCGCATGCGGGGCCCCGGATCACCGCCGGCCCGGGCGGCCTTCACCTGGGGCCCAAGAtcccgggggtccgggg..gcg                                                                                      >  2:3828701/8‑99 (MQ=255)
      tGCGCCAAGAAAANGCNGGGGCGCNCNNNNNGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcgga                                                                                    <  1:590716/101‑5 (MQ=38)
          ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagccc                                                                                >  1:2137467/1‑93 (MQ=255)
           cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagcccc                                                                               >  2:3976145/1‑92 (MQ=38)
            aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGAGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGG..G....G.....cggagccccc                                                                    <  1:4136423/101‑10 (MQ=37)
             aGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGG..G....G.....cggagcccccg                                                                   <  1:2426598/101‑11 (MQ=38)
                         ggCGCGCAGGCGGGGCCCCGGATCCCCGGCGGCCCGGGCGGCTTTCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGa                                                            <  1:3371816/101‑1 (MQ=18)
                              gcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCCCGGCAt                                                       >  1:2255344/1‑101 (MQ=21)
                                aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGAGGccacc                                                     >  2:2723659/1‑97 (MQ=21)
                                   gggggCCCCGGCCCCCGGGCGGCCCGGGCGGC.TCCCCCGGGGGGCAAAAGCCCCGGGGGGCGGGGG..G....GCGGCCCCCCCGGCGGGTCGCCGAGGCATCGCCt                                                  <  2:1905488/100‑1 (MQ=255)
                                    ggggCCCCGGATCCCCGGCGGCCCGGGCGGCTTTCCCCGGGGGCCAAAGATCCGGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTc                                                 <  1:2632290/101‑1 (MQ=18)
                                    ggggCCCCGGATCACCGGCGGCCGGGGCGGCTTTCCCCGGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTc                                                 <  1:1361394/101‑1 (MQ=18)
                                    ggggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGGCGCGGCACCGcccc                                                 >  1:824036/1‑99 (MQ=18)
                                     gggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGGCGGGGCAGCGccccc                                                >  2:3098302/1‑98 (MQ=18)
                                     gggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGGGGCGACGCCCCg                                                >  1:2811404/1‑101 (MQ=18)
                                       gCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGGCGCGGGCCCGCCTCggg                                              >  2:1370207/1‑100 (MQ=16)
                                        ccccGGACCCCGGGCGGCCGGGGCGGCTTTCGCCGGGGGCCAAAGACCCGGGGGGTCGGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCg                                             <  1:202039/101‑1 (MQ=12)
                                              aTCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGGCGCGGCCTCGCCCCGGCGGAAAcc                                       >  2:3536347/1‑101 (MQ=12)
                                                      cggcCCGGGGGGCTTGCACGTGGGGCCAAGGTGCCGGGGGGTCGGGGG..GCGGAG.....CCCCGGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTaa                               <  1:4313617/101‑1 (MQ=255)
                                                        gcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGGGCCGAGGCATCGCCCCGGGGAAAAccccttttaaaa                             >  2:4086862/1‑92 (MQ=12)
                                                           cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAcc                          <  1:4092047/101‑1 (MQ=25)
                                                           cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGGGCCCGGGGATCGCCCCGGCGACAAACCTTATTaaaaaac                          >  2:68326/1‑97 (MQ=9)
                                                           cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGGGGGAGCGCCCCGGGGGAAACCCTTAGTaaaaaac                          >  1:3467715/1‑97 (MQ=9)
                                                            gggCGGCTTTCCCCTGGGGCCAAAGACCCCGGGGGTCCGGGGGCG....GAC...CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccg                         <  1:3098546/101‑1 (MQ=21)
                                                            gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGGGGCGAGGCGTCGCCTCCGCGGCATCCCCTTGGAAAAAccg                         >  1:1609374/1‑101 (MQ=9)
                                                             ggcggcTTTCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgc                        <  2:2971730/101‑1 (MQ=21)
                                                               cggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGGCGAGGCGGCGCCCCCGCGGAAACCCCTCGTACAAAccgccc                      >  1:1623131/1‑101 (MQ=9)
                                                                gtcTTTCGCCGGGGGCCAAAGACCCGGGGGGTCGGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgcccg                     <  2:2799186/99‑1 (MQ=16)
                                                                gtcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgcccg                     <  2:4542101/99‑1 (MQ=21)
                                                                 gcTTTCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCG....GCC...CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgcccgc                    <  1:3843164/101‑1 (MQ=25)
                                                                   tttCACCTGGGGCCAAAGATCCCGGGGGTCGGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCgg                  <  1:3074994/101‑1 (MQ=21)
                                                                   tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGAGGGAACGCCCCGGCGAAAACCCCTTGTAAAAAACCNCCNCgg                  >  1:737228/1‑101 (MQ=9)
                                                                    ttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCCGGGGAACGCCTCGGCGAAAACCCCTTGTAAAAACCACCCCCGGa                 >  2:1469658/1‑101 (MQ=2)
                                                                         cTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAggg            <  2:3498500/101‑1 (MQ=21)
                                                                               ccAAAGATCCGGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGa      <  2:2870567/101‑1 (MQ=21)
                                                                               ccAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGa      <  2:651872/101‑1 (MQ=21)
                                                                                cAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGGGGGGTCGCCCCGGCGCAATACCCTAGTAAAAAACGCCCCCGGACCGGGAGCCGaa     >  1:199387/1‑101 (MQ=2)
                                                                                 aaaGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGAGGGATCGCCTCGGCGAAAACCCTTAGTAAAAACCCCCCGCGGGCAggggaccgcag    >  2:1128968/1‑93 (MQ=12)
                                                                                   aGATCCCGGGGGTCCGGGG..GCGGTG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGt  <  1:4255922/101‑1 (MQ=25)
                                                                                   aGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGCGCCGCGGGATCGCCTCGGCGCAAACCCTTAGTAAAAACCCCCCCCGGACAcggggccccaggg  >  2:1815489/1‑91 (MQ=2)
                                                                                                  |                                                                                            
CGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGG..G....G.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT  >  NC_014034/2330193‑2330372

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG