Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 2,494,015 | C→G | 6.4% | intergenic (+63/‑179) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 2,494,015 | 0 | C→G | 6.4% | 15.7 ‑1.7 ‑0.5 | 140 | intergenic (+63/‑179) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (6/3): ref base (55/76): total (61/79) | ||||||||||
Fisher's exact test strand distribution p-value = 1.78e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.01e-01 |
Only 100 of 151 total aligned reads displayed.
CGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTAA.GGGGGGGCGCT.GCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGA.AGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCT > NC_014034/2493917‑2494111
|
ctccgcGGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAcc < 2:720224/99‑1 (MQ=18)
cgccgcGGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGGTATTTGCAGCAAGATGAAAcc > 2:3893179/1‑101 (MQ=21)
gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGGGCTCGCCCCCG.TCCGCAAGCGGGCTCCCCCCGCGATATGTTCAGGAAGGTGAAAcac > 2:3752442/1‑99 (MQ=16)
cgcgGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGa < 1:3827145/101‑1 (MQ=21)
cgcgGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGa < 2:3085716/101‑1 (MQ=21)
cgcgGCGGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGa < 1:2415967/101‑1 (MQ=21)
cgcgCCGGGCGCGCGCCCCGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGa < 2:4138218/101‑1 (MQ=17)
gcggcgGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAt < 1:3873785/101‑1 (MQ=21)
gcggcgGGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAt < 2:3799038/101‑1 (MQ=21)
cggcggGCGCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATg < 1:2093370/101‑1 (MQ=21)
ggcgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCACCGGGAGATTTGCAGCAAGATGAAACAGGCTGc > 1:4013220/1‑101 (MQ=18)
gcgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGcc < 2:3405661/101‑1 (MQ=21)
cgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCt < 1:576105/101‑1 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCtt < 2:3907789/101‑1 (MQ=21)
ggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCGCGTCCGCAAGCGGACTCCCCCCGGGGTATTTGCAGCAAGATGAAACCGGATGCCttt < 1:1624367/101‑1 (MQ=21)
ggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt < 2:1947490/101‑1 (MQ=21)
gcgcgcGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTc < 2:363510/101‑1 (MQ=21)
gcgcgcGGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTc < 1:4452450/101‑1 (MQ=21)
cgcgGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATc > 2:2974540/1‑101 (MQ=21)
gcgGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCt < 1:2334011/101‑1 (MQ=21)
cgGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt < 2:1020681/101‑1 (MQ=21)
cgGCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt > 2:1188154/1‑101 (MQ=21)
ggCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg > 2:1364262/1‑101 (MQ=21)
ggCACGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg > 2:2736730/1‑101 (MQ=21)
cGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg < 1:1254986/101‑1 (MQ=21)
cGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg < 2:4362146/101‑1 (MQ=21)
cGACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg > 2:4046907/1‑101 (MQ=21)
gACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGa < 2:2833658/101‑1 (MQ=21)
gACAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGa < 1:3525447/101‑1 (MQ=21)
aCAGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa < 2:4427230/101‑1 (MQ=21)
aGGCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAat < 2:647773/101‑1 (MQ=21)
ggCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata < 2:3559894/101‑1 (MQ=21)
gCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAatat < 2:1324367/101‑1 (MQ=21)
gCCGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAatat < 1:3778516/101‑1 (MQ=21)
tcGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATc < 1:4054669/100‑1 (MQ=18)
ccGAGTAGGGGGGGGGCGCT.CCCCCCCGTCCGCAAGCGGACCCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATc < 2:2063019/101‑1 (MQ=18)
cGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc > 2:31263/1‑101 (MQ=18)
cGAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc < 1:1686562/101‑1 (MQ=18)
gAGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATccc > 1:3418496/1‑101 (MQ=18)
aGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCg < 1:1833890/101‑1 (MQ=18)
aGTAAGGGGGGGGCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCg > 1:1000152/1‑101 (MQ=18)
gtaaggggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGGTATTTGCAGCAAGATGAAAACGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 1:906249/6‑101 (MQ=17)
gtaaggggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg < 1:1350477/96‑1 (MQ=255)
gtaaggggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 1:1486152/6‑101 (MQ=255)
aaggggggggGCCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg < 2:1000069/98‑1 (MQ=18)
aaggggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg > 1:1628290/4‑101 (MQ=255)
ggggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggggg > 1:2629620/2‑101 (MQ=255)
gggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGt < 2:960816/101‑1 (MQ=255)
ggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggggggg > 2:1621830/1‑99 (MQ=255)
ggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:1668650/101‑1 (MQ=255)
ggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:2172571/101‑1 (MQ=255)
ggggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:4511415/101‑1 (MQ=255)
gggggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa > 1:3823557/1‑101 (MQ=255)
gggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:4515500/101‑1 (MQ=255)
ggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 1:4340028/101‑1 (MQ=255)
ggCGCT.GCCCCCCGTCCGCAAGCGGACTCCCCCAGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 1:3232344/101‑1 (MQ=255)
gcT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:2159991/1‑101 (MQ=255)
cT.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGG..G.a > 1:4349045/1‑101 (MQ=18)
t.GCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa > 1:14024/1‑100 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag < 1:704842/101‑3 (MQ=255)
gCCCCCCGTCCGCAAGCGGAATCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.GGGC..G.aac > 2:2183415/1‑99 (MQ=18)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc > 1:422015/1‑97 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:589397/101‑5 (MQ=255)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 1:198496/101‑4 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcca < 2:3670665/101‑6 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 1:509831/97‑7 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aagccag > 1:2985216/5‑95 (MQ=18)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga < 2:432097/98‑8 (MQ=255)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagag < 1:2418397/99‑9 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg > 2:4129599/2‑92 (MQ=255)
aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCag < 2:1264520/101‑2 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagcg > 1:2943247/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCagcgc > 1:798133/1‑97 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGG..GAAG.CCAG.AGGGGGGC.AGCG.ccc > 2:4255159/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.ccc > 2:2256315/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.cccc > 2:486759/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAG..AGGGGGGC.AGCG.ccccc < 2:1714876/101‑1 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.cccccct < 1:2160141/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.cccccct < 2:2243612/101‑3 (MQ=17)
ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.cccccctg < 2:2984987/101‑4 (MQ=17)
ccccGGGATATCTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.cccccctg > 1:2729047/1‑98 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AA.GACAGAGGGGGGC.AGCG.cccccctgacc > 1:1814513/1‑95 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCAGCAC.CCCCCTGcccc > 2:344576/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.CCCCCTGCCCcg > 1:1282178/1‑101 (MQ=2)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.CCCCCTGCCCcg > 2:1903843/1‑101 (MQ=0)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.CCCCCTGCCCcgc > 2:4290240/1‑100 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.CCCCCTGCCCcgcc < 2:2444885/101‑3 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCA.AGAGGGGGCAGCG.CCCCCTGCCCcgcc < 1:1127028/101‑3 (MQ=2)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGACCcggcg > 2:1611164/1‑101 (MQ=17)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGCAGCGG.CCCCCGGCCCCGGCGGTc > 2:714330/1‑101 (MQ=18)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTc < 1:1467624/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTcc < 2:1703597/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTcc > 1:3926664/1‑101 (MQ=18)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAC.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCg > 1:4037011/1‑101 (MQ=18)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCG.CCCCCCGCCCCCGCGGGcccgg > 1:4092509/1‑98 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAC.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGt > 1:2256617/1‑101 (MQ=18)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTgg < 2:2629435/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTggc > 2:2049065/1‑101 (MQ=18)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGgcgc > 1:4604971/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTCCCCGAAATGTCCCGGGGGGTGAA.TGGC..GAAG.CCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:3182635/101‑1 (MQ=17)
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CGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTAA.GGGGGGGCGCT.GCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGA.AGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCT > NC_014034/2493917‑2494111
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|