| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,163 | A→T | 4.3% | intergenic (‑146/+146) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,163 | 0 | A→T | 4.3% | 8.9 ‑1.7 ‑0.2 | 138 | intergenic (‑146/+146) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/0): ref base (86/46): total (92/46) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.78e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.06e-01 | ||||||||||
Only 100 of 180 total aligned reads displayed.
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGC > NC_014034/3068063‑3068263
|
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCa < 1:842149/101‑1 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAgc < 2:1320955/101‑1 (MQ=255)
ctgcgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAgc < 1:2511930/99‑1 (MQ=255)
cgcgCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAgcg < 1:1033073/101‑1 (MQ=255)
gcgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAgcgc < 2:2216653/101‑1 (MQ=255)
gcgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAgcag > 2:2511756/1‑99 (MQ=255)
cgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGcgcc > 2:682427/1‑101 (MQ=255)
cgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGcgcc > 2:3258107/1‑101 (MQ=255)
gcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGcgccc > 1:4606424/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGcgcccgc > 2:3264382/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGcgccccc > 1:3946962/1‑99 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGcccgcccc < 1:986640/101‑1 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGcccgcccc < 1:158099/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGcccgccccc > 1:192724/1‑100 (MQ=255)
aCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCcgccccgccc < 1:1017780/101‑1 (MQ=255)
aCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCcgccccgccc < 1:2235110/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCAt > 2:88169/1‑101 (MQ=255)
gATGGGCAGGCTGACCGACGCCCTCGCCGAGGTCATGCGGAACAGTGGCGTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCAt < 2:517154/101‑1 (MQ=255)
tGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATgg > 2:1844685/1‑101 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATggc.g < 2:4437711/101‑1 (MQ=255)
gcaaGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATggc.g > 2:1369109/4‑101 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGGCCCGCCCATggc.gggc > 1:1535491/1‑101 (MQ=255)
gCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGgcg.c < 2:1603472/101‑1 (MQ=255)
cTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.Ct < 1:1092964/101‑1 (MQ=255)
cTGACCGAGGCCAGGGCGGAGGTCGTGCGCAACTGGGGCCTCATGCCCGCCGAGGGCCTAAAGGCCCTC.GGGCAGGGCCCGCCGCGCCCATGGC.GGGCG.Ct < 2:2025190/101‑1 (MQ=9)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGACCGCCCCGCCCATGGC.GGGCG.CTtc > 2:36781/1‑101 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTtct < 2:2174552/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTtctc < 1:4670648/101‑1 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGGG.CCTCTcg > 2:987639/1‑101 (MQ=255)
ggcccATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgcc < 1:2393825/98‑1 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgcc < 1:1369204/101‑1 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgccc < 2:4442822/101‑1 (MQ=255)
gCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgcccg < 1:3480189/101‑1 (MQ=255)
gCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATCGC.GGGGG.CCTCTcccccc > 1:929017/1‑100 (MQ=18)
ccATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgcccgc > 2:3014188/1‑101 (MQ=255)
cATCGCCGAGGGCATGCGGAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAAGGCCCTC.TGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTcgcccgcc < 2:2385829/101‑1 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCccgcc.g > 2:2811834/1‑101 (MQ=255)
tCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.gg < 1:2161992/101‑1 (MQ=255)
tgCCGAGGCCAATCGCAACAGAGGTCCTGTGACCGCCGAGGGCCCAAAGGCACTC.GGCCTGCCCCCGCCCCGCCCTCCGCGGGGCC.CCTCCcgcccgcccc > 2:4010428/2‑99 (MQ=21)
cGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.ggg < 2:2250835/101‑1 (MQ=255)
gCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.gggg < 2:2474002/101‑1 (MQ=255)
ccGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.Ggggc < 2:4100751/101‑1 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.Cgggcg > 2:3863204/1‑101 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.Ggggcgggc < 1:4444452/101‑1 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.Ggggcgggc < 2:4521759/101‑1 (MQ=255)
gTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGGG.CTTCTCGCCCCCC.Ggggcggggg > 1:318053/1‑99 (MQ=255)
tCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCCCCCCCC.GGGGGGGgggc > 1:3163333/1‑101 (MQ=18)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGGCCGCC.GGGGCGGGCGc.c > 1:4510652/1‑101 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGc.c > 1:1292018/1‑101 (MQ=255)
aTGCGGAACAGTGGCCTCGTGACCGCCCAGGGCCCAAAGGCCCTC.GGCCAGCCCCCGCCCCGCCCATGGC.GGGCT.CTTCTCGCCCGCC.GGGGCGGGGGC.Cg > 2:3116385/1‑101 (MQ=17)
gCGGAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGc < 2:3490759/101‑1 (MQ=255)
gCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCCCCCCGCCCATGGC.GGGGG.CTTTTCGGCCGCC.GGggcgggcgtccgc > 1:2075691/1‑96 (MQ=17)
cgcgaCATTGGCCCCATGACCGCCGGGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.GTTCTCCCCCGCCGGGGGCGGGGCC.CGGc > 2:259607/5‑101 (MQ=17)
cGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGcc > 1:4270656/1‑101 (MQ=255)
cGGAACAGTGGCCTCGGGCCCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGcc < 1:1975985/101‑1 (MQ=255)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGccc > 1:3682157/1‑100 (MQ=255)
aaCCGTGCCCGCGGGCCCGCCGAGGGCCCAAAGGCCCTC.GCCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCctct < 2:1288729/101‑1 (MQ=14)
aaCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.Cgggccct > 2:4470190/1‑96 (MQ=255)
aaCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGCccct > 1:2560287/1‑101 (MQ=255)
aaCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCCCC.GGGGCGGGGGG.CGGCctcc > 1:2899676/1‑100 (MQ=255)
cAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGcccccgc > 1:1121434/1‑96 (MQ=255)
cAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CCTCTCGCCCCCC.CGGGCGGGGGC.Cgggccccgc > 1:3795759/1‑94 (MQ=17)
attGGCCCCGTGACCGCCGAGGGCCCAGAGGCCCTC.GGCCTGCGCCCGCCCCGCCCATGGC.GGGCGCCTTCGCCCCGCCC.GGGGGGGGGGC.Cgggcccccc > 1:3502596/3‑94 (MQ=14)
tgcccgcGTGCCCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCtgctgc < 2:1971232/95‑1 (MQ=255)
tGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGGCCCtgctgc > 1:4281483/1‑101 (MQ=255)
tGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGG.CGGCCCCcgctgc > 2:1168812/1‑101 (MQ=255)
tGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.CGGGCGGGGGC.CCGGCCCtcctgc > 2:1889618/1‑101 (MQ=14)
ggCCCCGTGACCGCCGAGGGCCCAGAGGCCCTC.GGCCTGCGCCCGCCCCGCCCATGGC.GGGCGCCTTCGCGGCGCCC.GGGGGGGGCGCGCGGccccccccc > 1:3905482/1‑94 (MQ=11)
ggCCCCGTGACCGCAGAGGGCCAAAAGCCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTgcg < 1:4658254/101‑1 (MQ=14)
ccTCGTGCCCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGcc < 1:1443431/101‑1 (MQ=255)
cGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.CGGGCGGGGGC.CGGCCTCTGCTGCGCCCgg > 2:1065322/1‑101 (MQ=255)
cGTGACCGCCGAGGGCCCAAAGGCACTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CCGCCCctgctggccccgg > 2:2107314/1‑94 (MQ=14)
gTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGCCCCCGCTGCGCCTggg > 2:3745336/1‑101 (MQ=255)
gTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CCGCCCCTGCTTCGCCTggg > 2:4647258/1‑101 (MQ=255)
gTGACCCCCGAGTGCCCAAA.GCACTC.GGGCAGCGCCCGCCCCGCCCCTGGC.GGCCG.CTTCCCGCCCGGC.GGGGGCGGGGG.CGGCCCCGCATGCCCCTgggg > 2:3894852/1‑101 (MQ=2)
tGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.CGGGCGGGGGC.CGGCCCCTGCTGCGCCTgggg > 1:1836682/1‑101 (MQ=255)
ccggccgGGGCCCCAAGGGCCCCG.GGCCCGCCCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGaa < 1:3014417/98‑1 (MQ=14)
cccgccgAGGGCCCAAAGGCCCTC.GGCCTGCGCCCGCCCCGCCATCGGCGGGGGG.CGTCGGGCCCCCC.GGGGGGGGGGG.GCGCGCCTGGTGCGCGTggggg > 1:2266289/2‑100 (MQ=2)
cgccgAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGGAAc > 1:3194271/1‑101 (MQ=255)
gccgAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGGGGGCGC.CGGCCTCTGCCGCGCCCGGGGGAACg > 2:2921410/1‑101 (MQ=14)
gccgAGGGCCCAAAGCCCCCC.GCCCGGCCCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACg < 1:3745611/101‑1 (MQ=17)
gAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGGGC.CGGCCTCTGCTGCGCCCGGGGGAAAgggc > 2:2847325/1‑99 (MQ=14)
gAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGG.CCGCCCCTGCTGCGCCTTGGGGAACgggc > 1:1891963/1‑99 (MQ=14)
ggccccAAGGGCCCGC.GGCCGGGGCCCGCCCCGCCCAGGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCtt < 1:3253589/98‑1 (MQ=17)
cccAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGAGC.CGGCCTCCGCTGCGCCCGGGGAAACggggtgggc > 1:1162120/1‑94 (MQ=14)
ccAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGGAACGGTCTTGGCa > 2:653584/1‑101 (MQ=255)
ccAAAGGCCCCCGGGCCGGCGCCCGCCCCGCCCAGGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGc < 1:1735974/101‑1 (MQ=17)
cAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCCGGGGGAACGGGCtttggcc > 2:1721011/1‑96 (MQ=14)
aaaGCCCCTC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCAcc < 2:109345/101‑1 (MQ=255)
aaGGCCCTC.GGCCAGCGCCCGCCCCGCCCATTGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCCCCTGCGCCTCGGGAAACCGGCTTgggcccg > 2:798112/1‑96 (MQ=14)
aGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGGCTTGGCACCGc > 2:2041847/1‑101 (MQ=255)
cccGC.GGGCTGCGCCCGCCCCCCCCATGGC.GGGCG.CTTGTGGCCCCCG.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCg < 1:1548664/101‑1 (MQ=17)
cTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCCCCCggg > 1:753277/1‑101 (MQ=255)
cTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCCCC.CGGGCGGGCGC.CGGGCTCTGCTGCGCCCGGGGGAACGGTCTTTGCACCGCCCcgg > 1:1627921/1‑101 (MQ=18)
cgggCCGGCCCCCCCCCCCCCCTGGGC.GGGCG.CTTCCCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGc < 1:2934073/99‑1 (MQ=18)
ggCCGGCCCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGGGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTc < 2:2290528/101‑1 (MQ=255)
gcccAGCCCCCCCCCGCCCCTTGGC.GGGCG.CTTCCCGCCCGCG.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTc < 2:1448801/99‑1 (MQ=18)
ccAGCGACCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcg < 1:36787/101‑1 (MQ=255)
cAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg > 1:1271358/1‑101 (MQ=255)
cAGCCCCCGCCCCCCCCATGGC.GGGCG.CTCCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcgg < 2:2350348/101‑1 (MQ=255)
|
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGGCCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCG.CTTCTCGCCCGCC.GGGGCGGGCGC.CGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGC > NC_014034/3068063‑3068263
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|