| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,255,899 | 5 bp→CCCCC | 100% | intergenic (+69/+169) | RCAP_rcc01184 → / ← RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,255,899 | 0 | T→C | 100.0% | 98.5 | 56 | intergenic (+69/+173) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (22/34): ref base (0/0): total (22/34) | ||||||||||
| * | NC_014034 | 1,255,900 | 0 | G→C | 100.0% | 98.6 | 56 | intergenic (+70/+172) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (22/34): ref base (0/0): total (22/34) | ||||||||||
| * | NC_014034 | 1,255,901 | 0 | G→C | 100.0% | 98.3 | 56 | intergenic (+71/+171) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (22/34): ref base (0/0): total (22/34) | ||||||||||
| * | NC_014034 | 1,255,902 | 0 | T→C | 100.0% | 97.3 | 56 | intergenic (+72/+170) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (22/34): ref base (0/0): total (22/34) | ||||||||||
| * | NC_014034 | 1,255,903 | 0 | A→C | 100.0% | 98.3 | 56 | intergenic (+73/+169) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (22/34): ref base (0/0): total (22/34) | ||||||||||
GACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TC.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..TGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA > NC_014034/1255829‑1255978
|||||
ggccTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCG.CCTTCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTcccccc < 1:2810349/99‑1 (MQ=2)
gACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTcccccc < 2:2817969/101‑1 (MQ=9)
gccTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCg < 2:2998951/100‑1 (MQ=2)
aCCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCg < 2:262693/101‑1 (MQ=9)
cTAGGGGTGCCGGACCGGAACGGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGC..CCCTGCGGGACTCCCCCCggg > 2:169957/1‑101 (MQ=2)
tAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGa > 1:2740666/1‑101 (MQ=2)
tAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGa > 2:3257410/1‑101 (MQ=2)
tAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGa > 2:3177762/1‑101 (MQ=2)
aGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGat < 2:3528564/101‑1 (MQ=2)
ggggTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCgggcaa > 2:4286807/1‑98 (MQ=2)
gggTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGatat < 2:2204250/101‑1 (MQ=2)
gTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATAttt < 1:2707785/101‑1 (MQ=0)
gTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATAttt < 2:4666616/101‑1 (MQ=0)
tGCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTc > 2:409650/1‑101 (MQ=2)
ccggaccggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCg < 1:1997034/101‑1 (MQ=2)
cggaccggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGCTATTTCCGc > 1:1594806/1‑101 (MQ=2)
cggaccggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGc > 1:260502/1‑101 (MQ=2)
cggaccggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGc < 1:90527/101‑1 (MQ=2)
ggaccggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGcc < 1:2163655/101‑1 (MQ=2)
accggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCaa < 2:2536190/101‑1 (MQ=2)
accggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCaa < 2:3490024/101‑1 (MQ=2)
accggaACCGGGGGCCTTCGGGCCCCCGCTT.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCaa < 1:2491559/101‑1 (MQ=2)
cccccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGcgcg < 2:4104729/92‑1 (MQ=17)
cccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGc > 1:3383625/8‑101 (MQ=17)
cccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTACGCCAAGGGGAAATGAACCCGGGGCGCGGc > 2:2229793/8‑101 (MQ=17)
ccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCt < 2:954359/95‑1 (MQ=18)
cgctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCtt < 2:3256954/96‑1 (MQ=18)
cgctttcGGGCCGCCCGAAGAGGGGGGGCCCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCtt < 1:1024209/96‑1 (MQ=17)
ctttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTc < 2:4383553/98‑1 (MQ=18)
cttgcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTc < 1:191944/97‑1 (MQ=18)
tttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGACATGAACCCGGCGCGCGGCTTTCa > 2:3508566/3‑101 (MQ=17)
tttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCa > 2:2371447/3‑101 (MQ=18)
ttcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAc > 1:369971/2‑101 (MQ=18)
tcGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAcc < 2:2098839/101‑1 (MQ=18)
cGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGGTTTCAcgt > 2:1466984/1‑99 (MQ=18)
cGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCt > 2:4563329/1‑101 (MQ=18)
cGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCt < 2:2967313/101‑1 (MQ=18)
cGGTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCt > 2:2404706/1‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt > 2:1671879/1‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt < 1:170586/101‑1 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt < 2:1104385/101‑1 (MQ=18)
gTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg > 2:1645715/1‑101 (MQ=18)
gTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg < 1:3037297/101‑1 (MQ=18)
gTCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg < 1:2578331/101‑1 (MQ=18)
tCCGCCCGAAGAGGGGTGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg < 2:1630539/101‑1 (MQ=18)
tCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg < 2:3828100/101‑1 (MQ=18)
tCCGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg > 2:260033/1‑101 (MQ=18)
gccGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg < 1:2558926/100‑1 (MQ=18)
ccGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTAACCTTggg > 2:2132871/1‑101 (MQ=18)
cGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGc < 2:2417941/101‑1 (MQ=18)
cGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGc > 2:3668554/1‑101 (MQ=18)
cGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGc < 2:368300/101‑1 (MQ=18)
cGCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACATTGGGc > 1:781637/1‑101 (MQ=18)
gCCCGAAGAGGGGGGGCGCTT..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGcc > 1:1950271/1‑101 (MQ=18)
gCCCGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGcc < 2:3454409/101‑1 (MQ=18)
ccGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa < 2:1188185/101‑1 (MQ=18)
ccGAAGAGGGGGGGCGCTG..CCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa < 2:260470/101‑1 (MQ=18)
|||||
GACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TC.TCGGTCCGCCCGAAGAGGGGGGGCGCTG..TGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA > NC_014034/1255829‑1255978
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|