| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,575,638 | 5 bp→GGGGC | 100% | intergenic (+40/+129) | corA → / ← RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,575,638 | 0 | C→G | 100.0% | 65.6 | 19 | intergenic (+40/+133) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/19) | ||||||||||
| * | NC_014034 | 1,575,639 | 0 | C→G | 100.0% | 66.3 | 19 | intergenic (+41/+132) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/19) | ||||||||||
| * | NC_014034 | 1,575,640 | 0 | A→G | 100.0% | 64.6 | 19 | intergenic (+42/+131) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/19) | ||||||||||
| * | NC_014034 | 1,575,641 | 0 | T→G | 100.0% | 61.0 | 19 | intergenic (+43/+130) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/19) | ||||||||||
| * | NC_014034 | 1,575,642 | 0 | T→C | 100.0% | 63.5 | 19 | intergenic (+44/+129) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/19) | ||||||||||
CCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCGCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTG > NC_014034/1575570‑1575722
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ccTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCgg < 1:289562/101‑1 (MQ=37)
tcttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCggggg < 1:1386565/101‑1 (MQ=37)
tcttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCggggg < 2:1430006/101‑1 (MQ=37)
cttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGa < 2:2053156/101‑1 (MQ=37)
ttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCGCGCGCGGATCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGAc < 2:2946130/101‑1 (MQ=25)
aaaTGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGAt < 2:1123986/101‑1 (MQ=37)
ggAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTcc < 2:1743454/101‑1 (MQ=37)
aGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCCCCCCCCGCCTGCGGGGGACGATGTccccc < 1:4397418/101‑1 (MQ=255)
aGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTccccc < 1:1229411/101‑1 (MQ=37)
aGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTccccc < 2:1564007/101‑1 (MQ=37)
aGGACTGGCTCTAGGGATTGCCCCCTCGCGCGGCTGGGTCCTCCGGATCGTGGGGGGCTG.CCGCCCCTCGCCAACCCCGCCTGCGGGGGACGATGTccccc < 2:3170126/101‑1 (MQ=255)
ggCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGccc < 1:2302111/101‑1 (MQ=37)
cTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGccccc < 2:447780/101‑1 (MQ=37)
gcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTg < 1:3306524/101‑1 (MQ=37)
cccTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTgcgc < 2:3578647/101‑1 (MQ=37)
ccTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGcc < 2:780344/101‑1 (MQ=37)
cgcgcgcgGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCa < 1:2081282/99‑1 (MQ=25)
cTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCa < 1:1189651/101‑1 (MQ=37)
tCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaa < 2:3715501/101‑1 (MQ=37)
cgcgcgGCCCGGGCGCCCGGAACGGGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaag < 1:1310758/101‑1 (MQ=255)
gcgcgGCTCGGGCGCCCGGAACGCGGGGGCCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCaaga < 2:693185/101‑1 (MQ=255)
ggCGCCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCt < 1:4281427/101‑1 (MQ=37)
gcgcCCGGAACGCGGGGGGCTGCCGCCCCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTg < 1:2885116/101‑1 (MQ=37)
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CCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCGCC.CGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCCAAGAAGAAACCCCTG > NC_014034/1575570‑1575722
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|