| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,707 | 3 bp→TCC | 100% | intergenic (‑131/‑270) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,707 | 0 | G→T | 100.0% | 81.8 | 34 | intergenic (‑131/‑272) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/33): ref base (1/0): total (1/33) | ||||||||||
| * | NC_014034 | 1,732,708 | 0 | G→C | 100.0% | 84.7 | 34 | intergenic (‑132/‑271) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/33): ref base (1/0): total (1/33) | ||||||||||
| * | NC_014034 | 1,732,709 | 0 | G→C | 100.0% | 88.4 | 34 | intergenic (‑133/‑270) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (1/33): ref base (0/0): total (1/33) | ||||||||||
TATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATG > NC_014034/1732606‑1732778
|||||
tataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.cccgg...gggcg > 1:1077418/1‑101 (MQ=255)
tATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGG.GG.C.CCCGGC..GGGGgg..g..ggg > 2:1651099/1‑99 (MQ=255)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGC..CGGGgg..g..gggc > 2:4325521/1‑98 (MQ=255)
gggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.cccgg...gggcgg..gcgggggcgcg > 2:76043/1‑91 (MQ=255)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc < 2:2075254/101‑1 (MQ=25)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc < 1:711268/101‑1 (MQ=25)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGc < 2:1973429/101‑1 (MQ=25)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGc < 2:1150798/101‑1 (MQ=25)
aacgCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGC..GGGGGG..G..CCGCCCCCCccccccccacc > 2:2993324/4‑95 (MQ=255)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCg < 1:1001759/101‑1 (MQ=25)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCg < 1:187209/101‑1 (MQ=25)
atctgTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTa < 2:3350387/97‑1 (MQ=21)
gCCGTCGGTGCGGGGCGGAAAGCGGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAt < 1:1614284/101‑1 (MQ=21)
gCCGTCAGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAt < 1:770119/101‑1 (MQ=21)
tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc < 2:3544459/101‑1 (MQ=21)
tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc < 2:1664309/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 2:2079693/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 1:3009094/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 1:1035101/101‑1 (MQ=21)
ggCGGAATGCCGGGTGCCAAGCAGTGTGTCGCTTCGGCGGGTCCGC.GG.CGCC.CCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:3965149/101‑1 (MQ=9)
ggAAAGCGGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa < 1:2146661/101‑1 (MQ=18)
aaaGCCGCGTGCCAAGCAGGCTTGCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGTGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACa < 2:3652841/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:2602226/101‑1 (MQ=18)
aGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAg < 1:930185/101‑1 (MQ=18)
cgggCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGa < 1:4327914/98‑1 (MQ=18)
gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGG..GGGGGG..GCCGCCCCCCCCCCCCCCGCGGATTTGGGGCCAGAAAAAACAAACggggc > 2:2228715/1‑99 (MQ=255)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 2:3612074/101‑1 (MQ=18)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 1:3693427/101‑1 (MQ=18)
ccAAGCAGGGTTTCGCTGCGGCGGGGCGGC.GGAAG.C.ACGAGC..GGGGAGTAC..GCCACCGAACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAg < 2:2927147/101‑1 (MQ=12)
cAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccc < 1:4410554/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:840507/101‑1 (MQ=18)
gTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg < 2:40717/101‑1 (MQ=18)
gTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg < 1:4121586/101‑1 (MQ=18)
tCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAg < 2:4664067/101‑1 (MQ=18)
gccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 1:3223963/101‑1 (MQ=18)
gccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 1:673949/101‑1 (MQ=18)
ccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg < 1:619161/101‑1 (MQ=18)
cgcgGCGGGGCCGC.GG.CG.ACCCGGGC..GGGGGGTCC..GCCCCCCCACCCCCCGCGTATTTGCGCCAAGAAGAAACAAGCGGGGGCAAGCCCCCCCGCCGCCGc > 2:3070030/1‑101 (MQ=19)
cggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCac < 2:2915139/101‑2 (MQ=18)
cggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCAt < 1:4251077/101‑1 (MQ=18)
ggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg < 1:3502259/101‑1 (MQ=18)
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TATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATG > NC_014034/1732606‑1732778
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 38 ≤
ATCG
|