| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,253,890 | +GGGGC | 100% | intergenic (+48/+43) | RCAP_rcc01181 → / ← hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,253,890 | 1 | .→G | 100.0% | 93.6 | 51 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (26/0): ref base (6/19): total (32/19) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.65e-09 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.80e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 2 | .→G | 100.0% | 93.6 | 51 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (26/0): ref base (6/19): total (32/19) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.65e-09 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.80e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 3 | .→G | 100.0% | 93.6 | 51 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (26/0): ref base (6/19): total (32/19) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.65e-09 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.80e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 4 | .→G | 100.0% | 93.6 | 51 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (26/0): ref base (6/19): total (32/19) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.65e-09 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.47e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 5 | .→C | 100.0% | 93.5 | 51 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (26/0): ref base (6/19): total (32/19) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.65e-09 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.80e-01 | ||||||||||
TGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAT > NC_014034/1253790‑1253955
|||||
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg < 1:3708695/101‑1 (MQ=255)
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg > 2:2243434/1‑101 (MQ=255)
gTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....gg > 1:3004662/1‑101 (MQ=255)
gTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....gg < 2:1482646/101‑1 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....ggg < 2:2829588/101‑2 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....ggg < 1:1981245/101‑2 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....ggg > 2:2554340/1‑100 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCC.AAATAACTCCGGGGGGGg.....gggg > 1:3906139/1‑99 (MQ=255)
gCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....gggg < 1:2059956/101‑3 (MQ=255)
gCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCg.....gggg < 2:53212/101‑3 (MQ=255)
tGGGCAAGCTCGGCTTCCAGCCCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATCCCTCGGGGGTGCG.....GGGg.........cg < 1:2716882/101‑1 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cg < 1:99134/101‑1 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cg < 1:304345/101‑1 (MQ=255)
gggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cgg < 1:2175364/101‑2 (MQ=255)
ggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cgga < 2:1676101/101‑3 (MQ=255)
ggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cgga < 1:3086969/101‑3 (MQ=255)
ggCAAGCTCGCCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cgga < 2:3127795/101‑3 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagc > 2:3477162/1‑97 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagc < 2:1137939/101‑5 (MQ=255)
aatcTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcc < 2:2655417/98‑6 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcc < 1:4206463/101‑6 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcc < 2:2147067/101‑6 (MQ=255)
aGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccc < 2:1308890/101‑7 (MQ=255)
aGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccc < 2:1055339/101‑7 (MQ=255)
gCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcccc > 2:1276243/1‑94 (MQ=255)
gCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcccc < 2:2798068/101‑8 (MQ=255)
cTCGGCTTCCAGCCCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc < 2:3259412/101‑9 (MQ=38)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc < 1:3929850/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc < 2:2663262/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc > 1:548740/1‑93 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc > 1:2736690/1‑93 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc < 2:3656738/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagccccc < 2:511076/101‑9 (MQ=255)
cGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg.........cggagcccccgc > 2:2278980/1‑91 (MQ=38)
cGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGGGCG.....GGGg.........cggagcccccgc > 2:1656170/1‑91 (MQ=38)
ggCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCg > 1:275792/1‑101 (MQ=12)
cGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa > 2:4104994/1‑101 (MQ=12)
gAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa > 2:627028/1‑101 (MQ=12)
aTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc > 2:4045528/1‑101 (MQ=9)
aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGCGGCGAAATCctc > 2:103769/1‑101 (MQ=9)
aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGCCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 1:2395901/1‑101 (MQ=9)
aaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct > 2:3266944/1‑101 (MQ=9)
aaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct > 2:3242456/1‑101 (MQ=9)
aCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc > 1:1827775/1‑101 (MQ=9)
cGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCCGCGAAAGCCGAGGCGAAATCCTCCCAc > 1:2325378/1‑101 (MQ=2)
gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg > 2:1324756/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 2:425547/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 2:2454519/1‑101 (MQ=9)
cccgccccgcTCTCATCTTGCCCTAAATCCCTGGGGGGTGGG.....GGGGCGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCt < 2:3004441/101‑1 (MQ=9)
cccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCt > 2:2511506/1‑101 (MQ=9)
cgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTc > 1:1068876/1‑101 (MQ=9)
cgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTc > 1:2709680/1‑101 (MQ=9)
gccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc > 1:2598650/1‑101 (MQ=9)
ccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTGCa > 2:1015137/1‑101 (MQ=2)
ccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCa > 1:1164426/1‑101 (MQ=9)
cccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAg > 1:388773/1‑101 (MQ=9)
cgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGtt > 1:3429484/1‑101 (MQ=9)
tctcATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg > 1:2908617/1‑101 (MQ=9)
ctcATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg > 1:3149085/1‑101 (MQ=9)
ctcATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg > 1:1722335/1‑101 (MQ=9)
tcATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGa > 1:4357286/1‑101 (MQ=9)
aTCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa > 1:729813/1‑101 (MQ=9)
tCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAt > 1:3488224/1‑101 (MQ=9)
|||||
TGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAT > NC_014034/1253790‑1253955
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|