| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,696,177 | +C | 100% | intergenic (‑105/+120) | RCAP_rcc01564 ← / ← mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,696,177 | 1 | .→C | 100.0% | 28.9 | 198 | intergenic (‑105/+120) | RCAP_rcc01564/mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (71/113): ref base (8/4): total (81/117) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.02e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.57e-03 | ||||||||||
Only 100 of 217 total aligned reads displayed.
CTCCTCCCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCC.TTTCG.G.CAATTCCACCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGC > NC_014034/1696076‑1696276
|
ctcctcCCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.c < 2:2735726/101‑1 (MQ=255)
tcctccCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.cc < 2:3017995/101‑2 (MQ=255)
cctccCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.cca < 1:874580/101‑3 (MQ=255)
cctccCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.cca < 1:3517932/101‑3 (MQ=255)
ctccCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.ccaa < 2:1891847/101‑4 (MQ=255)
ctccCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.ccaa > 2:3599075/1‑98 (MQ=255)
cccAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTGTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.ccaatt < 2:340517/101‑6 (MQ=255)
ccAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTc < 1:2138323/101‑1 (MQ=255)
cAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTca < 1:322824/101‑2 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTcac > 1:2181279/1‑99 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCG.TTTCG.GCCAATTcgccc > 2:1407532/1‑97 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAccc > 1:204179/1‑101 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAccc > 2:309171/1‑101 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAcccc > 2:4273049/1‑100 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAcccc > 1:490578/1‑100 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAcccc < 1:1261833/101‑2 (MQ=37)
tGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.G.CCAATTCAccccg > 1:3080434/1‑99 (MQ=255)
ccTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTTCG.C.CAATTcacccccgg > 2:869806/1‑93 (MQ=255)
ccTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCggg < 1:4226843/101‑1 (MQ=37)
tGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGag > 1:156649/1‑100 (MQ=37)
tctttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGatg < 2:2056095/98‑3 (MQ=25)
aTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGatgtt > 1:414096/1‑97 (MQ=25)
aTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGatgtt < 2:3580254/101‑5 (MQ=255)
aTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGatgtt < 1:2475399/101‑5 (MQ=255)
ttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGatgttt > 2:776293/1‑96 (MQ=255)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTg > 1:2432459/1‑101 (MQ=255)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTg < 2:3533268/101‑1 (MQ=255)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTgg < 1:4360063/101‑1 (MQ=255)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTgg < 2:2238252/101‑1 (MQ=255)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTgg > 2:4292133/1‑101 (MQ=25)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCA.TTTCG.GCCAATTCACCCCGGGATGTTTgg < 1:4280607/101‑1 (MQ=255)
aCGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGc > 1:2653741/1‑101 (MQ=255)
cGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGcc < 1:2834175/101‑1 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCa > 2:1175606/1‑101 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCa > 2:255564/1‑101 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCa > 2:4168684/1‑101 (MQ=255)
cTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGCTGTTTGGGGCaag > 2:1649210/1‑100 (MQ=19)
cTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaag > 1:994935/1‑100 (MQ=21)
cTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaag < 1:4190558/101‑2 (MQ=255)
tGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAG.AGGGGGGC.TGCCCCTCCTGGCC.CTTCGCC.CAACTCACCCCGGGATGTTTGGGTCaggg > 1:216287/1‑98 (MQ=255)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGcccaggtg > 1:1016181/1‑95 (MQ=19)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaaggtg < 1:808522/101‑5 (MQ=255)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaaggtga < 1:2240324/101‑6 (MQ=16)
tAATTTCGAATCTTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaaggtgaa < 2:1708772/101‑7 (MQ=255)
tAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaaggtgaa < 2:2120018/101‑7 (MQ=255)
aaTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCaaggtgaaa < 2:1255025/101‑8 (MQ=255)
aTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAac < 2:2837212/101‑1 (MQ=16)
tttCGAATCCTTGCACGAATTTTGCAAGGAGGGGAG.AGGGGGGC.TGCCCCCCCTGGCC.TTTCG.GCCAATTCATCCCCGGGTGTTTGGGCCAAGgggaaaaa > 1:117431/1‑96 (MQ=255)
tCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacacc > 1:2768825/1‑98 (MQ=255)
cGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacacct > 2:3693851/1‑97 (MQ=255)
gAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacacctt < 1:260799/101‑6 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttg > 2:658502/1‑95 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 1:3599323/101‑7 (MQ=12)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 1:4212137/1‑94 (MQ=255)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 1:1660196/1‑94 (MQ=255)
tCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgct > 2:1856447/1‑93 (MQ=12)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt < 2:2202451/101‑10 (MQ=9)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt < 1:195903/101‑10 (MQ=9)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgcttt < 1:571807/101‑11 (MQ=255)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt < 1:2635474/101‑1 (MQ=255)
gAATTTTGCAAGGAGGGGAGAGGTGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTgg < 2:588840/101‑1 (MQ=255)
aaTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgc < 1:4426896/101‑1 (MQ=9)
ttttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgcgc > 2:3959138/1‑101 (MQ=9)
tttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCa < 1:3147993/101‑1 (MQ=9)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt > 1:4349251/1‑101 (MQ=255)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt < 2:3218898/101‑1 (MQ=9)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATAc < 1:776373/101‑1 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc > 2:235636/1‑101 (MQ=9)
aggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACg > 2:438421/1‑101 (MQ=255)
gaggGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGcc > 2:344212/1‑101 (MQ=9)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct < 1:3959394/101‑1 (MQ=9)
ggggAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctc < 2:156628/101‑1 (MQ=255)
gaggggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGcc < 1:4168945/92‑1 (MQ=9)
gaggggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGcc < 2:3136530/92‑1 (MQ=9)
gggggccctcccccACCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 2:3521807/91‑1 (MQ=12)
aggggcgcttccccTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 2:1759983/91‑1 (MQ=255)
aggggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGccc > 2:46779/9‑101 (MQ=16)
aggggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 2:1952941/93‑1 (MQ=255)
ggggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCg < 1:1451990/94‑1 (MQ=255)
ggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGaa < 2:3561214/96‑1 (MQ=255)
ggcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGaa < 1:2976580/96‑1 (MQ=255)
gcgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAg < 1:2348519/97‑1 (MQ=255)
cgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg > 1:1837180/4‑101 (MQ=16)
cgctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg > 1:311941/4‑101 (MQ=16)
gctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAggg > 1:2198103/3‑101 (MQ=16)
ctGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGc > 2:1163031/2‑101 (MQ=16)
tGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa > 2:132586/1‑101 (MQ=255)
tGCCCCTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa > 2:3732371/1‑101 (MQ=19)
gCCCCTCCCGGCC.TCTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa < 1:3849427/101‑1 (MQ=255)
ccccTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAg < 2:909483/101‑1 (MQ=255)
ccccTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAg < 1:4247761/101‑1 (MQ=255)
ccctccctggc.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc < 1:410371/91‑1 (MQ=255)
cccTCCTGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc > 1:2066798/1‑101 (MQ=255)
tcctGGCC.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcgc > 2:3470728/4‑101 (MQ=255)
cc.TTTCG.GCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGaa < 1:1762462/101‑1 (MQ=25)
cc.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGaa < 2:1016096/101‑1 (MQ=19)
c.TTTCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAg > 2:3342118/1‑101 (MQ=255)
tttCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAgg > 1:612002/1‑101 (MQ=19)
ttCG.GCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 1:1594419/101‑1 (MQ=25)
ttCG.GCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 2:3656425/101‑1 (MQ=19)
|
CTCCTCCCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCC.TTTCG.G.CAATTCCACCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGC > NC_014034/1696076‑1696276
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|