| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,721,519 | +GG | 100% | intergenic (‑414/+32) | RCAP_rcc01588 ← / ← RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,721,519 | 1 | .→G | 100.0% | 35.4 | 13 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (2/10): ref base (1/0): total (3/10) | ||||||||||
| * | NC_014034 | 1,721,519 | 2 | .→G | 100.0% | 35.5 | 13 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
| Reads supporting (aligned to +/- strand): new base (2/10): ref base (1/0): total (3/10) | ||||||||||
TCGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGC > NC_014034/1721419‑1721610
||
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc > 1:1187584/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc > 1:3038456/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc > 1:645755/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc > 2:1586860/1‑101 (MQ=255)
tcgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc > 2:1695670/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgccc > 1:4202375/1‑100 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcc..g > 2:395624/1‑101 (MQ=255)
gggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.Cccgcccg > 1:410918/1‑99 (MQ=255)
gTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggg > 1:702706/1‑100 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggggcgg > 2:628013/1‑96 (MQ=255)
aaCGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..gggggggggggcc > 2:2476596/1‑91 (MQ=255)
gcgcTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCCGGGGGCTGCGCCCCCg > 2:4365923/1‑101 (MQ=255)
ccctcccGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..CCGCGGGGCGCCCGCGccgcccccccccc > 1:1610848/1‑96 (MQ=25)
ccccGCGTCGTTTTGTTTGGGG.CCGGGCGCTGGGGGGTTTCCCCCGC.GG.CGGCCCGGGGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGAt < 2:2619071/100‑1 (MQ=2)
cgcggctttttTTTTTGGG.CCGGCCG.CTTGGGGTTTTCCCCCCGGG.CGGCGCCGAGCCGC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGAtctc < 2:645687/93‑1 (MQ=9)
tttTTTTTTGG.GCGGGCCGCGTGGGGTTTTCCCCCC.GG.GCCCCCCGGGGCCACCCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCAc < 1:1060187/101‑1 (MQ=255)
tttttGGCCCGGTCGCCTGGGGGTTCCCCCCCC.GG.CGGCGCGGAGCCGC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTg < 1:2502725/101‑1 (MQ=255)
ttttgtg.CCCGTCCCCTTTGGGGTTTCCCCCC.GGCCTCCCCCGAGCCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTg < 2:3745397/95‑1 (MQ=255)
gtcgctggggggTTTCCGCCGC.GG.GGGCGCCGGGCCCC.CCCGCCGGGGGCTGCGCCCCCGGCCCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGcc < 1:2764243/93‑1 (MQ=255)
ctggggggCTTCCCCCCC.GG.CGGCCCCGCGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGAcc < 1:274110/97‑1 (MQ=255)
ggggATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCCGGGGGGTGCGCCCCCGGAGCCCCCCCCAAGAAATCAGAACACCTTTACCTCCGGGGCGACCcggg > 2:2106738/1‑100 (MQ=9)
gc.GG.CGGCGGCGAGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATaaa < 1:628081/100‑1 (MQ=37)
g.CTGCGCCGAGGCGA.CCCGCCGGGGGCTGCGCCCCCCGGCCCCCCCCCGAGATCTCAGATCCCCCTGTCCTTCGGGCCGGCCGGGCCGAGCGGGTAAAGtc > 2:2021796/1‑100 (MQ=12)
gcGAGGCCC.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGa < 2:702626/100‑1 (MQ=38)
gA.CCCGCCGGGGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATTAAGTTCCTCGACCTGGGc < 2:2456895/101‑1 (MQ=255)
||
TCGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGG.CCGGTCGCCTTGGGGATTTCGCCTC.GG.CTGCGCCGAGGCGA.CCCGCC..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGC > NC_014034/1721419‑1721610
Base quality scores:
ATCG
< 3 ≤
ATCG
< 21 ≤
ATCG
< 31 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|