| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,701,433 | +GGGCTTC | 100% | intergenic (+10/+39) | grpE → / ← mutS | GrpE protein/DNA mismatch repair protein MutS |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,701,433 | 1 | .→G | 100.0% | 103.6 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/39): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 2 | .→G | 100.0% | 109.3 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 3 | .→G | 100.0% | 104.8 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 4 | .→C | 100.0% | 107.7 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 5 | .→T | 100.0% | 109.1 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 6 | .→T | 100.0% | 108.2 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 7 | .→C | 100.0% | 107.1 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGC > NC_014034/3701333‑3701498
|||||||
catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg > 2:1590595/1‑101 (MQ=255)
catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg < 2:2093882/101‑1 (MQ=255)
catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg < 1:3025972/101‑1 (MQ=255)
atcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......g < 2:1311886/101‑1 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGACAGCCTGAGGCAGGCCgg.......gggc < 1:2545443/101‑4 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 2:1890935/101‑4 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 1:3442681/101‑4 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 1:307957/101‑4 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 2:1296339/101‑6 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 2:1125966/101‑6 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 1:872921/101‑6 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 1:412684/101‑6 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 1:1503923/101‑6 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 1:1590701/101‑6 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 1:433753/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 1:1699272/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 1:1563591/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:3180379/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 1:3248898/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:3014869/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:3002293/101‑7 (MQ=255)
gTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgcc < 2:1420685/101‑10 (MQ=255)
ctgcACGGCCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 1:3164676/101‑1 (MQ=21)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 2:2659946/101‑1 (MQ=21)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 2:2180082/101‑1 (MQ=21)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 1:417735/101‑1 (MQ=21)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 1:2794739/101‑1 (MQ=21)
tgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTc < 1:3615165/101‑1 (MQ=21)
tgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTc < 1:961114/101‑1 (MQ=21)
gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCa < 1:728953/101‑1 (MQ=21)
gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCa < 2:643228/101‑1 (MQ=21)
gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCa < 2:2968818/101‑1 (MQ=21)
cACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAg < 1:3527149/101‑1 (MQ=21)
gTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATa < 1:4162330/101‑1 (MQ=21)
gTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATa < 2:2321284/101‑1 (MQ=21)
gctgctgCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATaa < 2:3302518/100‑1 (MQ=21)
ctgctgCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATaaa < 1:604866/101‑1 (MQ=21)
gctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGa < 1:2140948/101‑1 (MQ=21)
gctgcCTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGa < 2:1609939/101‑1 (MQ=21)
ctgcTTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 2:70770/101‑1 (MQ=21)
ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 1:2736718/101‑1 (MQ=21)
tgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATc < 2:282858/101‑1 (MQ=21)
gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCCAGATAAAGATCa < 1:2423954/101‑1 (MQ=21)
cGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAATCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAg < 2:3009973/101‑1 (MQ=21)
gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt < 1:1797108/101‑1 (MQ=21)
gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt < 1:2118511/101‑1 (MQ=21)
tCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCCAGATAAAGATCAGTc < 1:3752378/101‑1 (MQ=21)
tCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGAGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTc < 1:391305/101‑1 (MQ=25)
cGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCtt < 1:2734890/101‑1 (MQ=21)
ggCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCttt < 1:4238643/101‑1 (MQ=21)
gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTCTc < 1:2557220/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 2:2840976/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 2:3141691/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 2:372193/101‑1 (MQ=21)
aaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGaa < 1:545032/101‑1 (MQ=21)
gTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAgg < 1:3868319/101‑1 (MQ=21)
gTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAgg < 2:3891483/101‑1 (MQ=21)
cGGCGTGAGTTCTATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgc < 2:3893446/101‑1 (MQ=21)
ggCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcg < 1:4314031/101‑1 (MQ=21)
gAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAg < 1:2035393/101‑1 (MQ=21)
aGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAgg < 1:501886/101‑1 (MQ=21)
ttCGATGCCGAAAGCCTGAGGCAGGGCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGc < 1:3234864/101‑1 (MQ=21)
|||||||
CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGC > NC_014034/3701333‑3701498
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|