| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 408,497 | +GCAGA | 100% | intergenic (+115/+33) | glnA1 → / ← dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 408,497 | 1 | .→G | 100.0% | 53.6 | 100 | intergenic (+115/+33) | glnA1/dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): new base (60/23): ref base (5/12): total (65/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
| * | NC_014034 | 408,497 | 2 | .→C | 100.0% | 53.9 | 100 | intergenic (+115/+33) | glnA1/dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): new base (60/23): ref base (5/12): total (65/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
| * | NC_014034 | 408,497 | 3 | .→A | 100.0% | 52.7 | 100 | intergenic (+115/+33) | glnA1/dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): new base (60/23): ref base (5/12): total (65/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
| * | NC_014034 | 408,497 | 4 | .→G | 100.0% | 53.6 | 100 | intergenic (+115/+33) | glnA1/dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): new base (60/23): ref base (5/12): total (65/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
| * | NC_014034 | 408,497 | 5 | .→A | 100.0% | 52.7 | 100 | intergenic (+115/+33) | glnA1/dapA | glutamine synthetase/dihydrodipicolinate synthase |
| Reads supporting (aligned to +/- strand): new base (60/23): ref base (5/12): total (65/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 113 total aligned reads displayed.
CTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGCAAAGACGGGGG.....GC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCG > NC_014034/408396‑408569
|||||
ctGCCCCCAGCCCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACggggg < 2:1872354/101‑1 (MQ=255)
ctGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACggggg > 1:386994/1‑101 (MQ=255)
tGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGGCCTTCATCTTGCCGCAAATAT.CCCGGGGGGGGGCTT.GCTGAAAGC.AAGACggggg.....g > 2:1257335/1‑101 (MQ=255)
gCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gc > 2:2845506/1‑101 (MQ=255)
ccccccAGCCCCCGGGGATTTTGGCGGAAAGATGAAC.CCGATGTCCTTCATCTTGCCGAAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gc < 2:2228571/100‑1 (MQ=25)
tcgcctcaCCCCCGGGATATTTGGGGCAAGATAAAC.CCCAT.CCTTTCACCTTGCCGCAAATAT.CCCGGGGGGTGAATTGGCCGAAGGCCAAGAGgggggcg > 2:2149309/8‑99 (MQ=25)
cccccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gca > 1:1204423/1‑100 (MQ=255)
cccccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gca < 1:1348590/101‑2 (MQ=255)
ccccCGGCCCCGGGGAATTTTGGGGCAAAGAGAAGCCCGTTGTCTTTCTTC.TGCCCAAAATTTCCCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gca < 2:3126802/101‑2 (MQ=255)
ccccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcag > 1:4414609/1‑99 (MQ=255)
ccccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcag < 2:2684992/101‑3 (MQ=255)
cccAGACCCCGGGGATATTTGGGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcaga < 1:4435016/101‑4 (MQ=25)
ccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagag < 2:4234465/101‑5 (MQ=255)
ccAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagag > 2:1700875/1‑97 (MQ=255)
cAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagc < 2:2490147/101‑6 (MQ=255)
cAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagc < 2:4019496/101‑6 (MQ=255)
agccccccGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagcc < 2:4067876/98‑7 (MQ=25)
gACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagccc < 2:2663694/101‑8 (MQ=25)
gcccccGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagcccc < 2:1468045/100‑9 (MQ=25)
aCCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagcgtccc > 2:1424686/1‑93 (MQ=25)
aCCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....Gcagagcccc > 2:192571/1‑93 (MQ=25)
tGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGCAAGNCNNNGGGCAGA.GC.....CCCCCGCACAGGGCGcc > 1:2386122/1‑101 (MQ=21)
tGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGcc > 1:4291385/1‑101 (MQ=21)
tGCGGCAAGAGGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGcc < 2:491217/101‑1 (MQ=18)
gCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCa > 2:537136/1‑101 (MQ=21)
gCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCaaaa > 2:3443726/1‑101 (MQ=21)
aaGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAgg > 2:2068729/1‑101 (MQ=21)
aaGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAgg > 1:1565829/1‑101 (MQ=21)
aGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGga < 2:1837096/101‑1 (MQ=21)
gATAAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgac < 1:1234996/101‑1 (MQ=18)
aTGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgacc < 2:4139898/101‑1 (MQ=21)
aTGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgacc > 1:1156226/1‑101 (MQ=21)
tGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccg < 1:2594633/101‑1 (MQ=21)
tGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccg < 2:1388660/101‑1 (MQ=21)
gAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccga > 2:2331352/1‑101 (MQ=21)
gAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccga > 1:1400519/1‑101 (MQ=21)
gAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccga > 1:96501/1‑101 (MQ=21)
aaG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGgaccgac > 1:563762/1‑101 (MQ=21)
g.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACAGACCt > 2:1339261/1‑101 (MQ=18)
ccGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTc < 2:3291327/101‑1 (MQ=21)
cGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCa < 2:2041322/101‑1 (MQ=21)
cGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCa < 2:2251903/101‑1 (MQ=21)
gATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCGAAAAGGACCGACCTCAg > 2:4014915/1‑101 (MQ=18)
gATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAg > 1:2451723/1‑101 (MQ=21)
gATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAg > 1:3425982/1‑101 (MQ=21)
gATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAg > 1:3199251/1‑101 (MQ=21)
gATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....GCAGAGTCCCCCGCACAGGTCGCCAAAAGGACCGACCTCAg > 1:1869477/1‑101 (MQ=21)
tGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGAt > 1:3319484/1‑101 (MQ=21)
tCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCa > 2:2849959/1‑101 (MQ=21)
tCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCa < 1:1831113/101‑1 (MQ=21)
tCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCa > 2:129135/1‑101 (MQ=21)
tCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCa > 1:1849518/1‑101 (MQ=21)
ccTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAg > 2:1853000/1‑101 (MQ=21)
ccTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAg > 2:459350/1‑101 (MQ=21)
ccTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTAGCCAAAAGGACCGACCTCAGATCAg > 2:301315/1‑101 (MQ=18)
ccTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGGCGCCAAAAGGACCGACCTCAGATccg > 1:2383108/1‑99 (MQ=18)
cTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGc > 1:1371001/1‑101 (MQ=21)
cTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGc > 2:4356696/1‑101 (MQ=21)
cTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGc < 2:4414337/101‑1 (MQ=21)
cTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGc > 2:2111752/1‑101 (MQ=21)
cTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGG.....GCAGAGACCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGc > 2:1988322/1‑101 (MQ=21)
ttCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGcc < 2:1838755/101‑1 (MQ=21)
tCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGccc < 1:4154338/101‑1 (MQ=21)
tCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGccc > 1:2442045/1‑101 (MQ=21)
tCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGccc < 2:1550886/101‑1 (MQ=21)
tCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGccc > 2:2837912/1‑101 (MQ=21)
cATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCg < 2:4222030/101‑1 (MQ=21)
cTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCg > 2:4164361/1‑101 (MQ=25)
cTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCg > 2:1159957/1‑101 (MQ=25)
tGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtg > 2:191748/1‑101 (MQ=25)
tGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtg > 1:3501644/1‑101 (MQ=25)
tGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtg > 1:1815177/1‑101 (MQ=25)
tGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtg > 1:1867594/1‑101 (MQ=25)
gCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtgt > 1:3622370/1‑101 (MQ=25)
gCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtgt > 1:1654988/1‑101 (MQ=25)
gCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCgtgt > 2:2995325/1‑101 (MQ=25)
ccGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGtt > 1:312979/1‑101 (MQ=25)
cGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTg > 2:4054662/1‑101 (MQ=25)
cAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCa < 1:1210474/101‑1 (MQ=255)
cAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCa > 2:1176575/1‑101 (MQ=25)
cAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCa < 1:978520/101‑1 (MQ=255)
cAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCa > 1:2223171/1‑101 (MQ=25)
aaaTAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTGGCac > 2:4305217/1‑100 (MQ=25)
aaTAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATc > 1:879041/1‑101 (MQ=255)
aaTAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATc > 1:607924/1‑101 (MQ=255)
aaTAT.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATc > 1:2012001/1‑101 (MQ=255)
atat.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATcg < 2:4425720/101‑1 (MQ=255)
at.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATcgcg > 2:186368/1‑101 (MQ=255)
t.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCgcgg > 1:3538011/1‑101 (MQ=255)
t.CCCGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACATCAGATCAGCCCGGCGTGTTGCATCgcgg > 2:1574151/1‑101 (MQ=255)
gcgggggggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCgcggc < 1:4188926/98‑1 (MQ=255)
cGGGGGGAGGCTT.GCTGAAAGC.AAGACGGGGGGAAGAGC.....CCCCCGCACAGGTCGCAAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCgcggcgg > 2:3477870/1‑100 (MQ=255)
gggggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCa < 1:2515490/101‑1 (MQ=255)
gggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAg > 1:2578490/1‑101 (MQ=255)
gggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAg > 2:3054918/1‑101 (MQ=255)
gggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAg > 2:2383846/1‑101 (MQ=255)
ggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAgc > 2:3641000/1‑101 (MQ=255)
ggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAgc > 2:1757440/1‑101 (MQ=255)
ggAGGCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAgc > 2:1603751/1‑101 (MQ=255)
gAGTCTT.GCTGAAAGC.AAGACGGGGGGCAGAGC.....CCCCCGCACAGGTCGCCAAAAGGACCGCCCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAgcg < 1:559268/101‑1 (MQ=255)
|||||
CTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAG.CCGATGTCCTTCATCTTGCCGCAAATAT.CCCGGGGGGAGGCTT.GCTGAAAGCAAAGACGGGGG.....GC.....CCCCCGCACAGGTCGCCAAAAGGACCGACCTCAGATCAGCCCGGCGTGTTGCATCGCGGCGTCAAGCGCG > NC_014034/408396‑408569
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|