| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 904,934 | +GC | 100% | intergenic (+38/‑158) | RCAP_rcc00821 → / → murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 904,934 | 1 | .→G | 100.0% | 41.3 | 110 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (55/40): ref base (1/13): total (57/53) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.45e-04 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.33e-01 | ||||||||||
| * | NC_014034 | 904,934 | 2 | .→C | 100.0% | 45.0 | 110 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (55/40): ref base (2/13): total (57/53) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.63e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.70e-01 | ||||||||||
Only 100 of 118 total aligned reads displayed.
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTG.GCT..G.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
||
gggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..g < 2:3240911/101‑1 (MQ=255)
cTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgc > 1:1446889/1‑99 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGGCCCCCTC.TTTTG.GCT..G.cgcc > 2:2621868/1‑98 (MQ=38)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcc < 2:1582500/101‑4 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcc < 2:4347192/101‑4 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcc > 2:319084/1‑98 (MQ=255)
ggggCGTGCTGCGCGGGCCGGTGCGGCGCCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcc < 1:13756/98‑4 (MQ=37)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcca < 2:693550/101‑5 (MQ=255)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcca < 2:2440821/101‑5 (MQ=255)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgcca < 1:1926765/101‑5 (MQ=255)
aGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaa < 2:2112757/101‑6 (MQ=255)
aGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaa < 2:4088139/101‑6 (MQ=255)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaaaa < 2:906949/101‑8 (MQ=37)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaaaat < 2:3399475/101‑9 (MQ=37)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaaaat < 2:171278/101‑9 (MQ=37)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCT..G.cgccaaaat < 1:395957/101‑9 (MQ=37)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTc < 2:1672097/101‑1 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTc < 1:1895865/101‑1 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTc > 1:557274/1‑101 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCa < 1:4153060/101‑1 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCa > 2:3388094/1‑101 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAc < 2:2944676/101‑1 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAc < 1:3246206/101‑1 (MQ=25)
cgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCCAAATTCAccc > 1:1195311/1‑101 (MQ=25)
cgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAccc < 2:1607839/101‑1 (MQ=25)
cgcCGGACGGTGCGGTGGCTCTTTGCCGCCATGCCCCGGAGCGACTGAGGGCGGGGCACGGGTGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAccc < 1:3687503/101‑1 (MQ=12)
gcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAcccc < 1:378125/101‑1 (MQ=25)
tGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCAcccccc < 1:24874/101‑1 (MQ=21)
tGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCC.CCTTTTG.GCTGCG.CCAAAAATCAcccccc > 1:167696/1‑101 (MQ=21)
ggCCGGTGCGGCGGCTCTTTGCCGCCATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.g < 2:2168952/101‑1 (MQ=21)
ccGGAGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.CGc > 2:157225/1‑101 (MQ=18)
gTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTa > 1:3159432/1‑101 (MQ=21)
ggcggcgCCTCTTTGCCGCGATGCGCCGGCGCGAGGGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTAt < 1:895076/100‑1 (MQ=17)
gcggcgGCTCTTTGCCGCTATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTGCTGC..G.CCCAAATTCACCCCCC.CGCGGAtt > 1:826138/1‑101 (MQ=18)
cggcggCTCTTTGCCGCGATGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTAttt < 2:2649842/101‑1 (MQ=18)
cggcggCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTAttt > 1:3639948/1‑101 (MQ=21)
cggcggCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTAttt > 1:4179475/1‑101 (MQ=21)
ggcggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTg < 2:5477/101‑1 (MQ=21)
cggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTGG.CTTC.G.CCAAAATTCAACCCCC.GGCGTATTTGCa > 1:2804400/1‑101 (MQ=18)
cggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCTCCCCCC.GGCGTATTTGCa < 1:3062422/101‑1 (MQ=21)
cggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCa < 2:304854/101‑1 (MQ=21)
cggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCa > 2:1488810/1‑101 (MQ=21)
ggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCAc > 1:2222468/1‑101 (MQ=21)
ctctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGGAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTCTTTGCACCa > 1:3458335/1‑101 (MQ=21)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAg > 1:502551/1‑101 (MQ=21)
ttGCCGCGATGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGaa < 1:2696799/101‑1 (MQ=21)
ttGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCCCCCCCC.GGCGTATTTGCACCAGGaa < 2:283737/101‑1 (MQ=21)
tGCCGCGGTGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGaaa < 1:1584287/101‑1 (MQ=18)
tGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGaaa > 1:1123130/1‑101 (MQ=21)
gCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGaaaa < 2:3944538/101‑1 (MQ=21)
ccGCTATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCCCCCCCC.GGCGTATTTGCCCCAGGaaaaa < 2:2649621/101‑1 (MQ=18)
gATGCACCGGCGCGACTGAGGGCGGGGCAAGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGccc < 2:1886978/101‑1 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCg > 2:1209026/1‑101 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCg > 1:1442764/1‑101 (MQ=21)
tGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCgg < 1:1708218/101‑1 (MQ=21)
tGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCgg > 2:3038996/1‑101 (MQ=21)
gCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGc > 1:4065951/1‑101 (MQ=21)
gcgcGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGttttt > 1:1685855/1‑101 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc > 1:2598423/1‑101 (MQ=21)
aCTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTgg > 1:824331/1‑101 (MQ=21)
cggAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCGAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt < 2:1368954/99‑1 (MQ=18)
tGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTc > 2:3543946/1‑101 (MQ=21)
gCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAAt < 2:2890473/101‑1 (MQ=21)
gCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAAt < 2:2663521/101‑1 (MQ=21)
cGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATa < 2:3099902/101‑1 (MQ=21)
cGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATa > 1:2280249/1‑101 (MQ=21)
gggCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACg < 2:4157842/101‑1 (MQ=21)
gCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGcc > 2:2208460/1‑101 (MQ=21)
gCAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGcc > 2:3973903/1‑101 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCg < 1:3280828/101‑1 (MQ=21)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg < 2:3872172/101‑1 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg > 1:2936171/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg > 1:3342301/1‑101 (MQ=25)
aGGGGGGCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg < 2:3413829/101‑1 (MQ=25)
ggggggCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggg > 1:3637746/1‑101 (MQ=25)
gggggCGCTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgggg > 2:2250113/1‑101 (MQ=25)
gcgcTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAg > 2:2710536/1‑101 (MQ=25)
cgcTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGt > 2:2549927/1‑101 (MQ=37)
cgcTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGt > 1:1835143/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc > 1:3358973/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc < 2:557222/101‑1 (MQ=37)
cTGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc > 2:1331138/1‑101 (MQ=37)
tcccccccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggcgggtgaccc > 2:3631711/3‑95 (MQ=25)
tGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCg > 1:2288450/1‑101 (MQ=37)
tGCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCg > 2:1827058/1‑101 (MQ=37)
ccccccccTTTTTTTG.GCT..GCCCAAAAATCCCCCCCCGGGTGTTTTTGCACCAGAAAAAACCCCGGTTTTTTCCCTGGTCAAAATCCGCCGGGGGGAGTcc < 2:794650/99‑1 (MQ=255)
gCCCCCCTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 2:1374464/1‑101 (MQ=37)
gCCCCCCTC.TTGTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACGAGGAAAAAGCCCGGCGTTTTTCGTGGTCGAAATACGCCGGGGGGAGTCCGc < 2:1040422/101‑1 (MQ=25)
ccccccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt < 1:1786442/101‑1 (MQ=37)
ccccccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt > 2:2716944/1‑101 (MQ=37)
ccccccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt > 1:1535675/1‑101 (MQ=37)
cccccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 2:199429/101‑1 (MQ=37)
cccTC.TTTTG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGc > 2:2132817/1‑101 (MQ=37)
ctcttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg > 1:2360253/4‑101 (MQ=37)
ctcttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgc > 1:361501/4‑100 (MQ=37)
tcttttG.GCTGCG.CCAAAATTCCCCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa < 1:2442299/99‑1 (MQ=37)
cttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc < 2:2761896/100‑1 (MQ=255)
cttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:1538238/2‑101 (MQ=255)
ttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 1:1821753/1‑101 (MQ=255)
ttttG.GCTGCG.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 1:1190071/1‑101 (MQ=255)
||
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTG.GCT..G.CCAAAATTCACCCCCC.GGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|