Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	974,265	+C	100%	intergenic (+145/+114)	RCAP_rcc00884 → / ← RCAP_rcc00885	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,265	1	.→C	100.0%	61.2	17	intergenic (+145/+114)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (12/5):  ref base (0/0):  total (12/5)

CCCGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGAC  >  NC_014034/974192‑974341                                                                            |                                                                                 gggggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTCCCTTGc                                                        >  1:1311422/8‑101 (MQ=25)    ggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGAc                                                     >  2:413542/5‑101 (MQ=255)         cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTCCCTTGCGACAAata                                                >  2:337827/1‑101 (MQ=38)         cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACaaaaa                                                >  1:3866871/1‑99 (MQ=255)         cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCCTGccgccaata                                                >  2:4358221/1‑93 (MQ=37)          gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGGTTTTTCCTTTCGACAAatat                                               >  1:3101661/1‑101 (MQ=38)           ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCCC.TGGGCAGCGGCTTGTTTTTCCCTTGCGCCAAATATc                                              >  1:3804382/1‑101 (MQ=37)            cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGCCAAATATcc                                             >  1:2334131/1‑101 (MQ=255)            cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATcc                                             >  2:4331554/1‑101 (MQ=255)             ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                            <  1:3074140/101‑1 (MQ=255)             ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                            <  2:1425318/101‑1 (MQ=255)              cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATTCC.g                                          >  2:2355930/1‑101 (MQ=38)              cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                          <  1:3978683/101‑1 (MQ=255)                 ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggg                                       >  1:2964436/1‑101 (MQ=255)                    ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtc                                    <  1:2907924/101‑4 (MQ=255)                    ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtc                                    <  1:2350016/101‑4 (MQ=255)                    ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggggggc                                    >  2:2655610/1‑98 (MQ=255)                         cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                               >  1:1934919/1‑93 (MQ=38)                                                       ggcgggACCCGGCATGG.CCGCTGCGCAGCGGCTTTTTTTCCCCTTGCGACAAATACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc  <  1:413582/101‑1 (MQ=2)                                                                            |                                                                                 CCCGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGAC  >  NC_014034/974192‑974341 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG