| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,696,179 | A→C | 6.0% | intergenic (‑107/+118) | RCAP_rcc01564 ← / ← mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,696,179 | 0 | A→C | 6.0% | 20.6 ‑3.1 0.0 | 206 | intergenic (‑107/+118) | RCAP_rcc01564/mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (9/4): ref base (77/116): total (86/120) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.54e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 213 total aligned reads displayed.
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCC.TTTCGG.CAATTCCACCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
|
ccAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTc > 1:4207815/1‑101 (MQ=255)
cAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTca < 1:322824/101‑2 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCG.TTTCGGCCAATTcgccc > 2:1407532/1‑97 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAccc < 1:1958533/101‑1 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAccc > 1:204179/1‑101 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAcccc < 1:1261833/101‑2 (MQ=37)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAcccc > 1:490578/1‑100 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAcccc > 2:4273049/1‑100 (MQ=255)
tGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAccccg > 2:2570260/1‑99 (MQ=255)
tGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGG.CCAATTCAccccg > 1:3080434/1‑99 (MQ=255)
ccTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTTCGC.CAATTcacccccgg > 2:869806/1‑93 (MQ=255)
cTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGa > 1:2136846/1‑101 (MQ=255)
tGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGat > 1:2192208/1‑100 (MQ=37)
tGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGag > 1:156649/1‑100 (MQ=37)
tctttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGatg < 2:2056095/98‑3 (MQ=25)
gAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGatg < 2:3445434/101‑3 (MQ=255)
ttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGatgttt > 2:776293/1‑96 (MQ=255)
ttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGatgttt > 1:2409147/1‑96 (MQ=255)
ttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGatgttt < 1:4368191/101‑6 (MQ=25)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTg < 2:3533268/101‑1 (MQ=255)
cgAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTg > 1:2432460/2‑101 (MQ=255)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTgg > 2:4292133/1‑101 (MQ=25)
gAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCA.TTTCGGCCAATTCACCCCGGGATGTTTgg < 1:4280607/101‑1 (MQ=255)
aCGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGc > 1:2653741/1‑101 (MQ=255)
cGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGcc < 1:2834175/101‑1 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCa > 2:255564/1‑101 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCa > 2:4168684/1‑101 (MQ=255)
cTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCCCCCCGGGATGTTTGGGCCaag > 1:4304143/1‑100 (MQ=21)
cgTTGAAGTTCGAAGCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGGCCCTCCTGGCC.TTTCGGCCAATTCCCCCCGGGATGTTTGGGACaagg < 2:194412/100‑3 (MQ=16)
gTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggt > 2:3569322/1‑98 (MQ=255)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGcccaggtg > 1:1016181/1‑95 (MQ=19)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtg < 1:808522/101‑5 (MQ=255)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtg < 1:3938231/101‑5 (MQ=255)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtga < 1:4215441/101‑6 (MQ=16)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtga > 2:1104112/1‑96 (MQ=255)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtga < 1:2240324/101‑6 (MQ=16)
tAATTTCGAATCTTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtgaa < 2:1708772/101‑7 (MQ=255)
tAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtgaa < 2:2120018/101‑7 (MQ=255)
aaTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCaaggtgaaa < 2:1255025/101‑8 (MQ=255)
aTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAac < 2:2837212/101‑1 (MQ=16)
tttCGAATCCTTGCACGAATTTTGCAAGGAGGGGAG.AGGGGGGC.TGCCCCCCCTGGCC.TTTCGGCCAATTCATCCCCGGGTGTTTGGGCCAAGgggaaaaa > 1:117431/1‑96 (MQ=255)
cGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacacct > 2:3693851/1‑97 (MQ=255)
gAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacacctt < 1:260799/101‑6 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 1:4141894/101‑7 (MQ=12)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttg > 2:658502/1‑95 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 2:3597375/101‑7 (MQ=12)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 1:1660196/1‑94 (MQ=255)
tCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgct < 2:20199/101‑9 (MQ=255)
tCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgct > 2:1856447/1‑93 (MQ=12)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt < 2:2202451/101‑10 (MQ=9)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt > 2:4387085/1‑92 (MQ=255)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt < 1:4033649/101‑10 (MQ=9)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAacaccttgcttt < 1:571807/101‑11 (MQ=255)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt < 1:2635474/101‑1 (MQ=255)
cGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTg < 1:923827/101‑1 (MQ=255)
gAATTTTGCAAGGAGGGGAGAGGTGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTgg < 2:588840/101‑1 (MQ=255)
aaTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgc < 2:117410/101‑1 (MQ=9)
tttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCa < 1:3147993/101‑1 (MQ=9)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt < 2:3218898/101‑1 (MQ=9)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATAc < 1:776373/101‑1 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc > 2:235636/1‑101 (MQ=9)
ggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGc < 1:3694104/101‑1 (MQ=255)
gaggGGAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGcc > 1:2156471/1‑101 (MQ=9)
ggggAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctc < 2:156628/101‑1 (MQ=255)
gggAGAGGGGC.GC.TGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:3065772/101‑1 (MQ=255)
gaggggcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGcc < 2:3136530/92‑1 (MQ=9)
gaggggcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGcc < 1:4168945/92‑1 (MQ=9)
gggggccctcccccACCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 2:3521807/91‑1 (MQ=12)
aggggcgcttccccTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 2:1759983/91‑1 (MQ=255)
aggggcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGccc < 1:4241725/93‑1 (MQ=255)
ggggcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCg < 1:1451990/94‑1 (MQ=255)
ggcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGaa < 1:2976580/96‑1 (MQ=255)
gcgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAg < 1:2348519/97‑1 (MQ=255)
cgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg < 2:3560932/98‑1 (MQ=16)
cgctGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg > 1:311941/4‑101 (MQ=16)
tGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa > 2:3732371/1‑101 (MQ=19)
tGCCCCTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa > 2:132586/1‑101 (MQ=255)
ccccTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAg < 2:909483/101‑1 (MQ=255)
cccTCCTGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc > 1:2066798/1‑101 (MQ=255)
tcctGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcgc > 2:1637499/4‑101 (MQ=255)
cctGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcgcg > 1:4355323/3‑101 (MQ=19)
ctGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCgagc > 2:549434/2‑101 (MQ=16)
tGGCC.TTTCGGCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGcc < 1:3535242/101‑1 (MQ=25)
tGGCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGcc > 1:2792553/1‑101 (MQ=255)
ggCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCg > 1:4136000/1‑101 (MQ=255)
gCC.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAAC..CCCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGa < 1:2173129/101‑1 (MQ=21)
cc.TTTCGGCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGaa < 1:1762462/101‑1 (MQ=25)
cc.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGaa < 2:1016096/101‑1 (MQ=19)
cc.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGaa < 1:255591/101‑1 (MQ=19)
c.TTTCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAg > 2:3342118/1‑101 (MQ=255)
tttCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAgg > 1:612002/1‑101 (MQ=19)
ttCGGCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 1:1594419/101‑1 (MQ=25)
ttCGGCCAATTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 2:3417890/101‑1 (MQ=25)
ttCGGCCAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 2:3656425/101‑1 (MQ=19)
tcggccAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgcg < 1:761875/96‑1 (MQ=19)
cggccAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgcgc > 1:3464967/5‑101 (MQ=255)
ggccAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGcgcg > 2:3989351/4‑101 (MQ=255)
ggccAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGcgcg > 2:3793398/4‑101 (MQ=255)
cAATTCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGcc > 1:1977741/1‑101 (MQ=255)
aaTTCCCCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGccc < 1:4248842/101‑1 (MQ=25)
|
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCC.TTTCGG.CAATTCCACCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|