| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,849 | C→G | 19.3% | intergenic (‑273/‑130) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,849 | 0 | C→G | 19.3% | 5.8 ‑3.5 0.0 | 35 | intergenic (‑273/‑130) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/7): ref base (13/15): total (13/22) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.12e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GT...C...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCC > NC_014034/1732749‑1732944
|
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGc > 1:2451077/1‑101 (MQ=255)
gCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACGGGCAAGGGCCCCGCTTTTCAT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCg > 1:3806407/1‑101 (MQ=255)
cGGGATCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCACGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCgg > 2:210593/1‑101 (MQ=255)
gACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCggggg < 1:2143278/101‑1 (MQ=255)
aCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGTCggaggg > 2:1475999/1‑101 (MQ=255)
ccAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCggggggg > 2:3316413/1‑100 (MQ=255)
ccAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCggggggg > 1:470503/1‑100 (MQ=255)
cAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTg > 2:216577/1‑101 (MQ=255)
aGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCggggggggg > 1:846945/1‑98 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGaa < 1:2082998/101‑1 (MQ=255)
gCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGagg > 2:439808/1‑99 (MQ=255)
ccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCggggggggggggcc > 1:439026/1‑93 (MQ=255)
ccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGCGGGCgggggggggggggg > 1:47186/1‑93 (MQ=255)
ccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCgggggggggggggccc > 1:3082352/1‑91 (MQ=255)
ctccatccGCATGCCTGCCGCGTCACCAGGCAAGGCCCCCGTTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGGGGGGGCTGAAG...tccccc < 2:911180/95‑1 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGGAG...cgcccc > 2:4210060/1‑101 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGAGatcggaaga > 1:572735/1‑93 (MQ=255)
tGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGGAG...gcccccc > 2:1011195/1‑100 (MQ=255)
gCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....gc < 1:216604/101‑2 (MQ=255)
gCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....gc > 1:782739/1‑100 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....gcgggtcgc < 2:2528483/101‑9 (MQ=255)
aTGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGGAG...gccccccccggggcgc > 2:3906379/1‑91 (MQ=255)
tGCCGTCCGCGTCAACAGGCAAGGCCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....gcgggtcgcct < 2:2047324/101‑11 (MQ=37)
acgcgggCCAGGGCCCCCTTTTTCCTGAGGCAAAATCCCCCTTTTTTTTTTTG.GGGGGGGGGGGGGGGTGAAC...CCCCCC.....GC...GGGTCG.CCTC.GGGCTTGccc < 2:225427/96‑1 (MQ=2)
aCAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATCCGCCCTTCTTTCTTTC.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GCGGGT...CG.CCTC.GGGCTTGCCCG.Ag < 2:3309517/101‑1 (MQ=18)
cAGGCCAGGGCCCCGCTTTTCCT.AGCCAAAATCCTCCCTTCTTTTCTTG.CGGGTGGGCGGGAGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.Agg < 2:509640/101‑1 (MQ=9)
cgcggCCCCTCTTTTCCA.AGACAAAA.CCCCCCTTTTTTTTTTT.GGGGGGGGGGGGGGGGGCAC...CCCCCCCCGCGGG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.aa < 2:947871/98‑1 (MQ=2)
ctgttCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTcccccc < 1:2116335/98‑1 (MQ=18)
ttCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTg < 1:2103321/101‑1 (MQ=21)
tagaGGAAAAATCCGCCTTTTTTTCTTTG.GGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTTCCCG.AGGC.G.AAAGCTTCCCCCCGTGaa < 2:4334514/98‑1 (MQ=2)
ctttggCAAAATTCCCCTTTTTTTTTTTG.CGGGGGGGGGGGGGGTGACC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGaa < 2:3565551/97‑1 (MQ=9)
gCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCt < 2:2080889/101‑1 (MQ=21)
aaaaTACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGGAGGC.CCCCCCG....GG...G...CG.CCCCGGGGCTGGCCCC.GGGG.G.AAAGATTCCCCCCCGCAAAACCtt > 2:622029/1‑101 (MQ=255)
aaaTACTCCCTTCTTTGTTTT.GGGGGGGGGGGGGGTTTAAC...CCCGCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGc < 1:1401343/101‑1 (MQ=12)
aaaTACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGc < 1:1049144/101‑1 (MQ=21)
atccGCCCTTCTTTCTTTT.GGGGGGGGCGGGGGGGGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCt < 2:379879/98‑1 (MQ=17)
ccccccTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:675348/98‑1 (MQ=18)
cccccTTTTTTTTTTTGGGGGGGGGGGGGGGGTGACC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 1:291304/99‑1 (MQ=9)
cccccTTTTTTTTTTT.GGGGGGGGGGGGGGGGGAAC...CCCCCCCGCG.GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:1057991/99‑1 (MQ=12)
cccccTTCTTTCTTTG.CGGGGGGGGGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:1281378/99‑1 (MQ=18)
cctttctttctTTG.GGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcg < 2:2383413/98‑1 (MQ=17)
ttctttctTTT.CGGGGGGGCGGGGGGGGGAGGCCCCCCCC.....GG...G...CGCCCCC.GGCCTCGCCCC.GGGG.G.AAGGCTCCCCCCCCGGAAAACCTTCCCtcccccgg > 2:2593836/1‑94 (MQ=255)
ttcttgT.CGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCt < 2:1771566/101‑1 (MQ=18)
ttt.CGGGGGGGCGGGGGGGGAAG...CCCCCCCCG..GG...G...CG.CCCC.GGGCGTGGCCGCGGGG.G.AAACATCCCCCCCCGGAAAACCTT.CCCGCGCGCGGCGCctttc > 2:1344531/1‑99 (MQ=255)
ggggggCGGGGGGTGAAG...CCCCCCGCG..GG...G...CG.CCTC.CGGCTTGCCCG.GGGCGG.AAACTTTCCCCCCGCGAAAACC.TGCCCTCGCGCGGCGGTTTCCCCTTc > 2:2010236/1‑101 (MQ=255)
gggCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGc < 2:2950318/101‑1 (MQ=21)
gCGGGGGGTGAAG...CCCCCCGCG..GG...G...GG.CCCC.GGGCTTGCCCC.GGGC.GCAAAGTTTCCCCCCGGACAAACCTTGCCCCCCCCCGCGCCTTTCCCTTCCGGcc > 1:333941/1‑101 (MQ=2)
|
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GT...C...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCC > NC_014034/1732749‑1732944
Base quality scores:
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|