Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,494,015 C→G 6.6% intergenic (+63/‑179) RCAP_rcc02319 → / → RCAP_rcc02320 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,494,0150C→G 6.6% 19.3 0.0 ‑0.0166intergenic (+63/‑179)RCAP_rcc02319/RCAP_rcc02320hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (4/7):  ref base (56/98):  total (61/105)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.01e-01

Only 100 of 182 total aligned reads displayed.

GCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.A.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTG  >  NC_014034/2493916‑2494113
                                                                                                     |                                                                                                        
gcgcCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAc                                                                                                          <  1:767842/101‑1 (MQ=21)
gccccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAc                                                                                                          <  2:1287237/98‑1 (MQ=18)
 cgccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAcc                                                                                                         <  2:1418470/101‑1 (MQ=21)
  gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGCTATTTGCAGCAAGATGAAAACg                                                                                                        >  2:151467/1‑101 (MQ=18)
  gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCg                                                                                                        <  2:236091/101‑1 (MQ=21)
  gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCg                                                                                                        >  1:1831324/1‑101 (MQ=21)
    cgcgGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGa                                                                                                      <  2:3196255/101‑1 (MQ=21)
     gcggcgGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAt                                                                                                     <  2:112598/101‑1 (MQ=21)
     gcggcgGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAt                                                                                                     <  1:2455584/101‑1 (MQ=21)
      cggcggGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATg                                                                                                    <  1:2893087/101‑1 (MQ=21)
       ggcgggcgCGCGGAACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGc                                                                                                   >  2:1723956/1‑101 (MQ=18)
        gcgggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGcc                                                                                                  <  1:1811761/101‑1 (MQ=21)
          gggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCtt                                                                                                <  1:4074397/101‑1 (MQ=21)
          gggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCtt                                                                                                >  2:628191/1‑101 (MQ=21)
           ggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGGCATTTGCAGCAAGATGAAACCGGTTGCCttt                                                                                               >  2:1014575/1‑101 (MQ=18)
            gcgcgcGGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTc                                                                                              <  1:4427462/101‑1 (MQ=21)
             ggcgcgGCGCGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCa                                                                                             <  2:3910641/100‑1 (MQ=18)
             cgcgcgGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCa                                                                                             <  2:1105378/101‑1 (MQ=21)
               cgcgGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATc                                                                                           <  2:423148/101‑1 (MQ=21)
                gcgGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCt                                                                                          <  1:602055/101‑1 (MQ=21)
                 cgGCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt                                                                                         <  1:1235454/101‑1 (MQ=21)
                  ggCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg                                                                                        <  2:2326949/101‑1 (MQ=21)
                   gCACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGc                                                                                       >  2:2713331/1‑101 (MQ=21)
                    cACGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGcc                                                                                      >  2:3568212/1‑101 (MQ=21)
                     aCGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc                                                                                     <  2:3086890/101‑1 (MQ=21)
                     aCGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc                                                                                     <  1:1075202/101‑1 (MQ=21)
                      cGACGGGCCGAGTAGG.GGGGGGGCGCTCCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATAAAACCGGATGCCTTTCATCTTGCCCg                                                                                    <  2:2023637/101‑1 (MQ=18)
                      cGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg                                                                                    <  1:2561155/101‑1 (MQ=21)
                      cGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg                                                                                    <  2:2992867/101‑1 (MQ=21)
                      cGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg                                                                                    <  1:4347640/101‑1 (MQ=21)
                      cGACAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTATCATCTTGCCCg                                                                                    <  1:2350473/101‑1 (MQ=18)
                        aCAGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa                                                                                  <  2:3266273/101‑1 (MQ=21)
                         cAGGCCGATTAGG.GGGGGGGCGCTGCCCCCCGTCCGCAATCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaaa                                                                                 <  2:1865859/101‑1 (MQ=18)
                          aGGCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCGAAATGAAACCGGGTGCCTTTCATCTTGCCCGAAat                                                                                >  1:3626024/1‑101 (MQ=18)
                          aGGCCCAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCACAAAat                                                                                <  2:137179/101‑1 (MQ=18)
                           ggCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata                                                                               <  1:269917/101‑1 (MQ=21)
                           ggCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata                                                                               >  2:4043230/1‑101 (MQ=21)
                           ggCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata                                                                               <  1:1698919/101‑1 (MQ=21)
                            gCCGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAatat                                                                              <  1:1991105/101‑1 (MQ=21)
                              cgggtaagggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATc                                                                             <  1:3026218/92‑1 (MQ=18)
                              cGAGTA.AGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc                                                                            <  2:1380647/101‑1 (MQ=18)
                                  gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg                                                                         <  1:2456452/96‑1 (MQ=255)
                                   taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg                                                                        <  1:72196/97‑1 (MQ=255)
                                        ggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg                                                                   <  2:1735060/101‑1 (MQ=255)
                                        ggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg                                                                   <  2:2757045/101‑1 (MQ=255)
                                         gggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa                                                                  <  2:2241220/101‑1 (MQ=255)
                                         gagggggttGCCCCCCGTCCGCTCGCGGACTCCCCCCGTGATATTTGCAGAAAGATGAAACCGGATTCCTTTCTTCTTGCCCGAAATATCCCGGGGGGTGa                                                                  <  2:2316349/93‑1 (MQ=14)
                                          ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa                                                                 <  1:2149874/101‑1 (MQ=255)
                                           gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t                                                               >  1:1378452/1‑101 (MQ=255)
                                            ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg                                                              <  2:257003/101‑1 (MQ=255)
                                              cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc                                                            <  2:3804933/101‑1 (MQ=255)
                                              cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc                                                            <  1:2374334/101‑1 (MQ=255)
                                              cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc                                                            <  2:1030138/101‑1 (MQ=255)
                                               gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g                                                         <  1:3097965/101‑1 (MQ=255)
                                                cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.a                                                       <  2:1195484/101‑1 (MQ=255)
                                                 tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa                                                      <  2:2495794/101‑2 (MQ=255)
                                                 tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa                                                      <  1:2144125/101‑2 (MQ=255)
                                                 tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa                                                      <  1:3568460/101‑2 (MQ=255)
                                                  gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTTCCCGAAATATCTCTGTGGGGTAA.TGGT..G.atc                                                     >  1:1313118/1‑99 (MQ=18)
                                                  gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag                                                     <  1:1081080/101‑3 (MQ=255)
                                                   cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc                                                    <  1:2808866/101‑4 (MQ=255)
                                                    ccccG.TCCTCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcca                                                  <  1:1331605/101‑6 (MQ=18)
                                                      cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag                                                 <  1:3438156/97‑7 (MQ=255)
                                                        cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagag                                               >  1:3401873/3‑93 (MQ=255)
                                                        cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagag                                               <  1:573662/99‑9 (MQ=255)
                                                         gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aagccagagg                                              >  1:1827773/2‑92 (MQ=21)
                                                                aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCag                                        <  1:2028967/101‑2 (MQ=18)
                                                                aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCag                                        <  2:413502/101‑2 (MQ=18)
                                                                 gCGGACTCCCCCCGGGATTTTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagc                                       <  2:4145191/101‑3 (MQ=18)
                                                                 gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagc                                       >  2:450441/1‑99 (MQ=18)
                                                                   ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAGCCAGAGGGGGGCagcgc                                     >  1:815323/1‑97 (MQ=17)
                                                                      cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.cc.cc                               >  2:688702/1‑101 (MQ=17)
                                                                          ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAT.TGGC..GAAGCCGGGGGGGGGCGGGCC.cc.ccccc                            >  2:3136668/1‑99 (MQ=17)
                                                                          ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.cc.cccctg                           <  1:4366253/101‑4 (MQ=17)
                                                                             cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGACC.CCCTGccc                         >  2:1214419/1‑101 (MQ=17)
                                                                             cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATACCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGccc                         >  1:2563268/1‑101 (MQ=17)
                                                                              gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGcccc                        <  1:2186554/101‑1 (MQ=0)
                                                                              gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGcccc                        >  2:1325244/1‑101 (MQ=18)
                                                                               ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcg                       >  2:1447132/1‑101 (MQ=0)
                                                                               ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGAGAA.GGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcg                       >  1:4009471/1‑101 (MQ=17)
                                                                               ggATANNTGCAGAAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcg                       <  1:1594892/101‑1 (MQ=17)
                                                                                gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgc                      <  1:2793530/101‑2 (MQ=0)
                                                                                 atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgcc                     <  1:1155047/101‑3 (MQ=2)
                                                                                  tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCACcggcg                    >  2:341801/1‑101 (MQ=17)
                                                                                   atTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgccgg                   <  2:337533/101‑1 (MQ=2)
                                                                                   atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcggcgg                   >  1:947985/1‑101 (MQ=17)
                                                                                   atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAGCCAGAGGGGGGCAGCAC.CC.CCCTGCCCcggcgg                   >  1:501559/1‑101 (MQ=17)
                                                                                   anNTGCNGCAAGATGAANGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgccgg                   <  2:1707762/101‑1 (MQ=2)
                                                                                     ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgccggat                 >  2:91130/1‑99 (MQ=2)
                                                                                        cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGTGC.AGCGCCC.CCCTGCCCCGGCGGTCCGt              >  1:1490453/1‑101 (MQ=18)
                                                                                        cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCCGCGGGCCgg              >  2:3847046/1‑100 (MQ=14)
                                                                                          gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTgg            >  1:1966347/1‑101 (MQ=17)
                                                                                           caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTggc           >  1:3860326/1‑101 (MQ=18)
                                                                                           caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTggc           <  1:3185265/101‑1 (MQ=17)
                                                                                            aaGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTggcg          >  2:2922315/1‑101 (MQ=18)
                                                                                             aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTggcgg         <  2:1229934/101‑1 (MQ=17)
                                                                                                tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTGGCGgcgc      <  2:225445/101‑1 (MQ=17)
                                                                                                tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTGGCGgcgc      >  2:4269411/1‑101 (MQ=17)
                                                                                                tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.CCTCCCTGCCCCGGCGGTCCGTGGCGgggc      >  1:414463/1‑101 (MQ=17)
                                                                                                    aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg  <  1:2335769/101‑1 (MQ=17)
                                                                                                     |                                                                                                        
GCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.A.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTG  >  NC_014034/2493916‑2494113

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG