| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,222 | C→T | 2.9% | intergenic (‑205/+87) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,222 | 0 | C→T | 2.9% | 2.7 ‑1.9 ‑0.8 | 139 | intergenic (‑205/+87) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/4): ref base (56/79): total (56/83) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.48e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.63e-01 | ||||||||||
Only 100 of 186 total aligned reads displayed.
CAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATCG > NC_014034/3068122‑3068322
|
cgggggCCTCGGGCCCGCCGGGGGCCC.AAGG.CC.CCCGGCCCAGCGCCCGCCCCGCCCAG.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTctgc < 1:3895399/97‑1 (MQ=11)
cTCGTGACCGCCGAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCCCTGCTGCGCCt > 2:2155637/1‑101 (MQ=255)
tCGTGACCGCCGAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCT.g > 1:4178452/1‑101 (MQ=255)
gcccgccgGGGGCCCAAAGG.CC.CTCGG.CCGGCGCCCCCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGa < 1:2197436/99‑1 (MQ=255)
gcccgccgAGGGCCCAAGGC.CC.CTGGG.CCGGCCCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGa < 2:2564448/99‑1 (MQ=17)
gccgAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCC.GGGGGAACg > 2:2285164/1‑101 (MQ=255)
ccgcggggCCCCAAGC.CC.CCCGC.CCGGCGCCCGCCCCGCCCAT.AGCGGGCGC.TTCTCGCCCGCCGGGGCAGGCGCCGGCCTCTGTTGCGCGC.ggggcagac < 1:806305/96‑6 (MQ=14)
ccgAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACgg > 1:569544/1‑101 (MQ=255)
ccgAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCCCCCCGCCCAT.GGCGGGGGC.TTCTCGCCCGCCCGGGGGGGCCGCGGGCGCGGCTTCGCCttgagagcagg > 1:4245741/1‑91 (MQ=2)
cgggggCACAAAGC.CCACCCGG.CGCGCCCCCCCCCCGCCCCT.GGCGGGCGC.TTCTCGCCCGCCGGGCCGGGCGCCGGCCTCTGTTGTGCCTCGCGGAAACg < 1:789343/98‑1 (MQ=1)
gggggGCCAAAGGCCC.CCCGG.CCAGCGCCCGCCCCGCCCAG.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGt < 1:2756847/99‑1 (MQ=17)
ggggccccAAAGC.CC.CGCGC.CCCGCCCCCCCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTc < 1:94940/96‑1 (MQ=17)
gAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGGAACgggc > 1:3082443/1‑99 (MQ=255)
gAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCCGGGCGGGGGCCGGCCTCTGCTGCGCCT.GGGGGAACgggc > 1:1714818/1‑99 (MQ=255)
ggggCCCAAAGGCCC.CCCGG.CAGGCCCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCCCCCGCGGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTc < 2:3693253/100‑1 (MQ=14)
ggtgccAAAGG.CC.CCGGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGTCGGGCGCTGGCCTCTGTTGCACTT.GGGGAAACGGTcgc < 2:2243335/97‑3 (MQ=14)
gggCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCTCTGCCGGGCCC.GGGGGAACgggcgt > 1:1080923/1‑97 (MQ=14)
gccccAAGGG.CC.CGGGG.CCCGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTGCCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTg < 2:1111415/99‑1 (MQ=17)
ccAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCCCTGCTGCGCCT.GGGGGAACGGGCCTgggc > 2:1540988/1‑99 (MQ=14)
cAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCT.GGGGAAACGGGCTTGGCA.c > 2:2058250/1‑101 (MQ=255)
cAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGCCCGGCCTCTGCTGCGCCC.GGGGAAACGGTCCTGGCA.c > 2:4082969/1‑101 (MQ=17)
aaaGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCCCTGCTGCGCCT.GGGGAAACGGGCTTTGCA.cc > 2:1181234/1‑101 (MQ=255)
aacg.CC.CCCGG.CCCCCCCCCCCCCCCCCCGG.GGGGGGCCCTTTCCCCCCCGCGGGGGGGGCCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.cc < 2:3476493/98‑1 (MQ=12)
aGG.CC.CCCCG.CCCGCCCCCGCCCCCCCCCTGGGTCGGTGC.TTCTCGCCCGCGGGGGCCGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCg < 1:3806813/101‑1 (MQ=12)
gccc.cTCGG.CCAGCCCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGcc < 1:2178935/99‑1 (MQ=255)
g.CC.GTCGC.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGccc < 2:3367110/101‑1 (MQ=255)
g.CC.CTCGG.CCGGCCCCCGCCCCGCCCAT.GGCGGGCGC.TTCCCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGccc < 1:1230525/101‑1 (MQ=255)
g.CC.CCCGC.CCGGCGCCCGCCCCGCCCAG.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGccc < 1:2035821/101‑1 (MQ=18)
gcccgggg.CCGGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGGGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGccc < 1:415710/95‑1 (MQ=18)
cc.cTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGGAAAGGTCTTTGGA.CCGCCCg > 2:2573001/1‑101 (MQ=17)
cTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCT.GGGGGAACCGGCTTTGCA.CCGCCCcgg > 2:1025453/1‑101 (MQ=17)
cTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCCGGGCGGGCGGCCGCCTCTGCTGCGCCT.GGGGGAACGGGCTTGGCACCCGCCCgg > 2:3090597/1‑101 (MQ=17)
gcccggcccccgccccgcCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTc < 2:4321560/93‑1 (MQ=255)
g.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTcc > 2:2675972/1‑101 (MQ=255)
ccggcccccgccccgcCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCcg < 1:2059035/95‑1 (MQ=255)
cAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCcgg > 2:3616461/1‑101 (MQ=255)
cAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCcgg > 1:480110/1‑101 (MQ=255)
aGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCcggc > 1:2602358/1‑101 (MQ=255)
gcccgcccCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGGA.CCGCCCGGGCTCCggcggg > 2:2925692/1‑101 (MQ=255)
cccccccccgcCCTG.GGCGGGCGC.TTCTCCCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCggcggg < 1:4083229/100‑1 (MQ=21)
cccgccccgcCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCggcgggc > 1:2953170/1‑101 (MQ=255)
ccgccccgccCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGGCTTGGCA.CCGCCCGGGCTCCggcgggcg > 2:3262666/1‑101 (MQ=255)
cgccccgcccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGGAACGGGCTTGGCA.CCGCCCGGGGTCCGgcgggcgg > 2:3823363/1‑101 (MQ=255)
ccccggtctt.GGCGGGCGC.TCCCCGCCCGCCGGGGCGGTCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCgggg < 2:3935668/92‑1 (MQ=21)
cccgccgAG.GGCGGTCGC.TCCTCGCCCGCGGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGa < 2:907956/101‑1 (MQ=25)
ccgcccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGaa > 2:490992/1‑101 (MQ=255)
ccgcccAG.GGGGGGCGC.TTCCCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGaa < 1:585543/101‑1 (MQ=255)
cgcccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGgaa > 2:4142509/1‑101 (MQ=255)
gcccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAg > 1:160693/1‑101 (MQ=255)
ccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGGAAggg > 1:4445019/1‑100 (MQ=255)
ccAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCCGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGGAAGGc > 2:3054680/1‑101 (MQ=255)
cagggcgggcgC.TGCTCCCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCa < 2:3348661/98‑1 (MQ=255)
t.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAgggcgg > 2:240261/1‑97 (MQ=255)
gcgggcgC.TTCCCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGtac < 2:569353/101‑3 (MQ=255)
cgggcgC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGcc > 1:1383882/1‑101 (MQ=255)
gggcgC.TTCTCGCCGGCGGGGGCGGGCCCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCGGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCt < 1:4027870/101‑1 (MQ=25)
ggcgC.TTCTCGCCCGCCGGGGGGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCtt < 1:2411157/101‑1 (MQ=255)
ggcgtctcccgcccgcgGGGGCGGGCCCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCtt < 1:3148457/92‑1 (MQ=37)
gc.TTCCCGCCCGCGGGGGGGGCCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTcc < 1:4439927/101‑1 (MQ=37)
c.TTCTCTCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCt > 1:2745461/1‑101 (MQ=255)
c.TTCTCGCCCGCCGGGGCGGGCCCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCt < 2:1756929/101‑1 (MQ=255)
ttggcccccgccGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTg < 2:546642/95‑1 (MQ=255)
ttCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTg < 1:1300437/101‑1 (MQ=255)
ttCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGGGCCTTTCCTg > 2:279513/1‑101 (MQ=255)
tctcGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCtaa > 2:3526083/1‑99 (MQ=255)
ctcGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGAt < 1:1660301/101‑1 (MQ=255)
cccgcccgccGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGAt < 1:1434038/99‑1 (MQ=255)
tcGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATc > 2:1926835/1‑101 (MQ=255)
cgcccgccGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATcc > 2:2633487/1‑101 (MQ=255)
ggcggggggggGGGGCGAAGGCCTCTGTCGTGCTT.GGGGAAACGGTCTTGGCA.CAGGTGATGAGCCAGCGGGCGGGGAAAGGCAGTGCCTTTCCCGATCCg < 1:2459313/94‑1 (MQ=25)
gcccgccGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCg > 2:3966398/1‑101 (MQ=255)
gcgggggCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCg < 1:1850898/98‑1 (MQ=255)
gccgGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGGGCCTTTCCTGATCCGCCCg > 2:1270569/1‑101 (MQ=255)
gggggGGGCCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGaa < 2:3027493/100‑1 (MQ=255)
ggggCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGaaa > 2:2338181/1‑101 (MQ=255)
ggggCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGaaa > 1:3343111/1‑101 (MQ=255)
gggcgggcGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAAt > 1:657879/1‑101 (MQ=255)
gggcgggcGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAAt < 1:2925913/101‑1 (MQ=255)
gggggacgcCGGCCTCTGCTGCGCCT.GGGGAAACGGTCGTGGCA.CCGCCCGGGCCCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATc < 1:1919993/95‑1 (MQ=25)
gggcgCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATcccc < 1:2519456/101‑1 (MQ=255)
ggcgCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATccccc > 2:1032752/1‑101 (MQ=255)
cgcCGGACTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTc > 2:63876/1‑101 (MQ=255)
gcCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCa < 2:3672768/101‑1 (MQ=255)
cccGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCa < 1:3118074/100‑1 (MQ=255)
ccGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAg < 1:279548/101‑1 (MQ=255)
ccGGCCTCGGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGGGGGGAAAGCCAGTGCCTTTCTTGATCCGCCCGAAATCCCCCTCAg < 2:4245472/101‑1 (MQ=37)
gCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAgcgc > 1:3418189/1‑101 (MQ=255)
ccTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCa < 2:1441450/101‑1 (MQ=255)
ccTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCa > 1:2851238/1‑101 (MQ=255)
ctctGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAg < 2:4444747/101‑1 (MQ=255)
ctctGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCCCAGCGCAg > 2:3834277/1‑101 (MQ=255)
ctgctgCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCCGGa > 2:1529859/1‑101 (MQ=255)
ctgctgCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGa < 1:4304574/101‑1 (MQ=255)
ctgctgCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGa < 1:1025541/101‑1 (MQ=255)
ctgctgCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGa > 1:1474728/1‑101 (MQ=255)
tgctgcGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGAt > 2:1232489/1‑101 (MQ=255)
gctgcGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATc > 2:4314048/1‑101 (MQ=255)
gctgcGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATc < 1:2566014/101‑1 (MQ=255)
gctgcGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATc > 2:1513719/1‑101 (MQ=255)
ctgcGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATcg < 1:491044/101‑1 (MQ=255)
|
CAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CC.CTCGG.CCAGCGCCCGCCCCGCCCAT.GGCGGGCGC.TTCTCGCCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCT.GGGGAAACGGTCTTGGCA.CCGCCCGGGCTCCGGCGGGCGGGGAAAGGCAGTGCCTTTCCTGATCCGCCCGAAATCCCCCTCAGCGCAGGATCG > NC_014034/3068122‑3068322
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|