| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,575,638 | 5 bp→GGGGC | 100% | intergenic (+40/+129) | corA → / ← RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,575,638 | 0 | C→G | 100.0% | 70.8 | 20 | intergenic (+40/+133) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,639 | 0 | C→G | 100.0% | 70.0 | 20 | intergenic (+41/+132) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,640 | 0 | A→G | 100.0% | 68.1 | 20 | intergenic (+42/+131) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,641 | 0 | T→G | 100.0% | 59.1 | 20 | intergenic (+43/+130) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/19): ref base (0/0): total (0/20) | ||||||||||
| * | NC_014034 | 1,575,642 | 0 | T→C | 100.0% | 66.8 | 20 | intergenic (+44/+129) | corA/RCAP_rcc01455 | magnesium/cobalt transport protein CorA/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/20): ref base (0/0): total (0/20) | ||||||||||
CTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCGCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCC > NC_014034/1575550‑1575707
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cTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCCCGCGCGGCTAGGGGGCCCGGGACGCGTCCaggcgcgccac > 1:3389056/1‑91 (MQ=255)
tGGGCCTTCTTCAAATGGAAGGGCTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCt < 1:3146589/101‑1 (MQ=25)
tGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCt < 2:859108/101‑1 (MQ=37)
tGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCt < 2:4417092/101‑1 (MQ=37)
gCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCg < 2:2676567/101‑1 (MQ=37)
gCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCCTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCg < 1:3835870/101‑1 (MQ=25)
cttcttCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCggg < 1:397515/101‑1 (MQ=37)
ttcttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCgggg < 2:3080043/101‑1 (MQ=37)
ttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGAc < 2:3281390/101‑1 (MQ=37)
ttcAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGAc < 1:2207483/101‑1 (MQ=37)
aaaTGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGAt < 2:4212475/101‑1 (MQ=37)
aaaTGGAAGGACTGGCTTTAGGGCTTGCGCCCGCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGAt < 1:886542/101‑1 (MQ=25)
aaTGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATg < 1:2565555/101‑1 (MQ=37)
ggAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTcc < 1:2394169/101‑1 (MQ=37)
cTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGccccc < 1:3582920/101‑1 (MQ=37)
aGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGc < 1:3565575/101‑1 (MQ=37)
cTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTAt < 2:1630177/101‑1 (MQ=37)
tGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTAttt < 1:3323791/101‑1 (MQ=37)
tGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCCGCCGCCCCCCGCACCACCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTAttt < 1:4407998/101‑1 (MQ=255)
gcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTg < 1:4155895/101‑1 (MQ=37)
gcgcCCTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGCCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTg < 1:3815862/101‑1 (MQ=255)
ccTCGCGCGGCTCGGGCGCCCGGAACGCGGGGGGCTGCCGCCCCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGcc < 1:1114553/101‑1 (MQ=37)
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CTCGGCCTTTCTGTCCTGGGCCTTCTTCAAATGGAAGGACTGGCTTTAGGGCTTGCGCCCTCGCGCGGCTCGGGCGCCCGGAACGCGGCCATTTG.CGGCGCCCGCACCCCCCGCCTGCGGGGGACGATGTCCCCCGCGCCCCCTTGCGTATTTGCGCC > NC_014034/1575550‑1575707
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 38 ≤
ATCG
|