| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,707 | 3 bp→TCC | 100% | intergenic (‑131/‑270) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,707 | 0 | G→T | 100.0% | 75.2 | 36 | intergenic (‑131/‑272) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/33): ref base (1/1): total (1/35) | ||||||||||
| * | NC_014034 | 1,732,708 | 0 | G→C | 100.0% | 85.5 | 36 | intergenic (‑132/‑271) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/34): ref base (1/1): total (1/35) | ||||||||||
| * | NC_014034 | 1,732,709 | 0 | G→C | 100.0% | 89.8 | 36 | intergenic (‑133/‑270) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/35): ref base (1/0): total (1/35) | ||||||||||
GTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCC > NC_014034/1732612‑1732780
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gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGC.GG.CCCCGG..GGGGg..g..g..ggg > 1:3211375/1‑99 (MQ=255)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCGGC.CCGGGC..GGGGg..g..g..gggc > 1:3565799/1‑98 (MQ=255)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CC.CGC..GGCCg..g..g..gggacc > 2:3482098/1‑96 (MQ=255)
tCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCCGGG..GGGGg..g..g..gggccc > 2:3258430/1‑96 (MQ=255)
cGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.Cccggg..ggggg..g..gcgggcac > 2:4404700/1‑94 (MQ=255)
ggggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGG..GGGGG..G..G..Gcgcccc > 1:2144327/1‑100 (MQ=255)
gagGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GAGCCGGGC..CGGGG..G..G..GCGCCGGCCccccc > 2:3598854/1‑101 (MQ=255)
agGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGG..G..G..GCGCCCCCCcccccc > 1:1317387/1‑100 (MQ=255)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCAccccc < 2:4112580/101‑1 (MQ=25)
gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg < 2:4150718/101‑1 (MQ=25)
gTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCg < 1:1866188/101‑1 (MQ=25)
tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCgg < 2:2123651/101‑1 (MQ=25)
tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..AGG.G..G..G..CCCCCCGCCccggctcccc > 2:2207937/1‑93 (MQ=255)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGG..GGGGG..G..G..GCCCCCCCCcccccccccc > 2:2846371/1‑96 (MQ=255)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGGATC..C..GCCCCCGCACCCCCGGc < 1:3049891/101‑1 (MQ=37)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGG..G..G..CCGCCCCCCcccccccccc > 2:452225/1‑96 (MQ=255)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCg < 1:2230478/101‑1 (MQ=25)
aGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGt < 2:2039214/101‑1 (MQ=25)
ggCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTa < 1:4291833/101‑1 (MQ=25)
gCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAt < 1:2822342/101‑1 (MQ=25)
cGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTAttt < 2:2197933/101‑1 (MQ=25)
tGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCa < 1:3599102/101‑1 (MQ=21)
ggggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaaga < 2:4033100/101‑1 (MQ=21)
gggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaa < 2:937029/101‑1 (MQ=21)
ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:1852620/101‑1 (MQ=18)
ggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:2109448/101‑1 (MQ=18)
cGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAgaagaa < 1:2161466/101‑1 (MQ=18)
ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa < 2:1299150/101‑1 (MQ=18)
gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc < 2:2078712/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:3469757/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:3918651/101‑1 (MQ=18)
aaGCCGCGTGACAAGCAGGGTTTCGCCGCGGCGGGGCAGCGGC.GACCCGGGCAGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 2:1058920/101‑1 (MQ=18)
gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc < 2:463680/101‑1 (MQ=18)
gCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGc < 1:3525803/101‑1 (MQ=18)
gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAc < 2:3214114/101‑1 (MQ=18)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 1:2781204/101‑1 (MQ=18)
gCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCa < 1:3881522/101‑1 (MQ=18)
gggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccccc < 2:2977817/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:3015952/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:2144188/101‑1 (MQ=18)
tttCGCCGCGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGc < 2:1831561/101‑1 (MQ=18)
ttCGCCGCGGCGGGGCCGCGGC.GACCCGGGC..GGGGT..GTCC..GCCGCCACGCCCCTGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa < 2:3696035/101‑1 (MQ=25)
ctccccgcTGCGGGGCCGCCGC.GACCCGGGCGGGGGCC..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCa < 2:2006285/97‑1 (MQ=21)
gccgcGGCGGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 2:667191/101‑1 (MQ=18)
gcggggGGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCa < 2:1317290/101‑1 (MQ=18)
cggcggGGCCGCGGC.GACCCGGGG..GGGGG..G..GCCGCCCCCCCCCCCCCCGCGGATTTTCGCCCAGAAGAAACAAACGGGGCCAAGCCCCCCCCCACCCGccg > 2:2082861/1‑99 (MQ=255)
ggcggGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg < 1:3258662/101‑1 (MQ=18)
cggGGCCGCGGC.GACCCGGGCGGGGGCT..C..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGcc < 1:298500/101‑1 (MQ=18)
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GTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGC.GA.CCGGGC..GGGCG..G..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCC > NC_014034/1732612‑1732780
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 38 ≤
ATCG
|