| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,868 | 2 bp→GT | 100% | intergenic (‑292/‑110) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,868 | 0 | T→G | 100.0% | 38.0 | 21 | intergenic (‑292/‑111) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (3/16): ref base (0/0): total (3/18) | ||||||||||
| * | NC_014034 | 1,732,869 | 0 | C→T | 100.0% | 42.7 | 21 | intergenic (‑293/‑110) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (3/17): ref base (0/0): total (3/18) | ||||||||||
CAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GT...C...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGCCCGG > NC_014034/1732789‑1732947
|||||
acgcgggCCAGGGCCCCCTTTTTCCTGAGGCAAAATCCCCCTTTTTTTTTTTG.GGGGGGGGGGGGGGGTGAAC...CCCCCC.....GC...GGGTCG.CCTC.GGGCTTGccc < 2:225427/96‑1 (MQ=2)
aCAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATCCGCCCTTCTTTCTTTC.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GCGGGT...CG.CCTC.GGGCTTGCCCG.Ag < 2:3309517/101‑1 (MQ=18)
cAGGCCAGGGCCCCGCTTTTCCT.AGCCAAAATCCTCCCTTCTTTTCTTG.CGGGTGGGCGGGAGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.Agg < 2:509640/101‑1 (MQ=9)
cgcggCCCCTCTTTTCCA.AGACAAAA.CCCCCCTTTTTTTTTTT.GGGGGGGGGGGGGGGGGCAC...CCCCCCCCGCGGG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.aa < 2:947871/98‑1 (MQ=2)
ctgttCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTcccccc < 1:2116335/98‑1 (MQ=18)
ttCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTg < 1:2103321/101‑1 (MQ=21)
tagaGGAAAAATCCGCCTTTTTTTCTTTG.GGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTTCCCG.AGGC.G.AAAGCTTCCCCCCGTGaa < 2:4334514/98‑1 (MQ=2)
ctttggCAAAATTCCCCTTTTTTTTTTTG.CGGGGGGGGGGGGGGTGACC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGaa < 2:3565551/97‑1 (MQ=9)
gCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCt < 2:2080889/101‑1 (MQ=21)
aaaaTACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGGGGAGGC.CCCCCCG....GG...G...CG.CCCCGGGGCTGGCCCC.GGGG.G.AAAGATTCCCCCCCGCAAAACCtt > 2:622029/1‑101 (MQ=255)
aaaTACTCCCTTCTTTGTTTT.GGGGGGGGGGGGGGTTTAAC...CCCGCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGc < 1:1401343/101‑1 (MQ=12)
aaaTACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGc < 1:1049144/101‑1 (MQ=21)
atccGCCCTTCTTTCTTTT.GGGGGGGGCGGGGGGGGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCt < 2:379879/98‑1 (MQ=17)
ccccccTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:675348/98‑1 (MQ=18)
cccccTTTTTTTTTTTGGGGGGGGGGGGGGGGTGACC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 1:291304/99‑1 (MQ=9)
cccccTTTTTTTTTTT.GGGGGGGGGGGGGGGGGAAC...CCCCCCCGCG.GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:1057991/99‑1 (MQ=12)
cccccTTCTTTCTTTG.CGGGGGGGGGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:1281378/99‑1 (MQ=18)
cctttctttctTTG.GGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcg < 2:2383413/98‑1 (MQ=17)
ttctttctTTT.CGGGGGGGCGGGGGGGGGAGGCCCCCCCC.....GG...G...CGCCCCC.GGCCTCGCCCC.GGGG.G.AAGGCTCCCCCCCCGGAAAACCTTCCCtcccccgg > 2:2593836/1‑94 (MQ=255)
ttcttgT.CGGGGGGGCGGGGGGTGAAC...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCt < 2:1771566/101‑1 (MQ=18)
ttt.CGGGGGGGCGGGGGGGGAAG...CCCCCCCCG..GG...G...CG.CCCC.GGGCGTGGCCGCGGGG.G.AAACATCCCCCCCCGGAAAACCTT.CCCGCGCGCGGCGCctttc > 2:1344531/1‑99 (MQ=255)
ggggggCGGGGGGTGAAG...CCCCCCGCG..GG...G...CG.CCTC.CGGCTTGCCCG.GGGCGG.AAACTTTCCCCCCGCGAAAACC.TGCCCTCGCGCGGCGGTTTCCCCTTc > 2:2010236/1‑101 (MQ=255)
gggCGGGGGGTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGc < 2:2950318/101‑1 (MQ=21)
gCGGGGGGTGAAG...CCCCCCGCG..GG...G...GG.CCCC.GGGCTTGCCCC.GGGC.GCAAAGTTTCCCCCCGGACAAACCTTGCCCCCCCCCGCGCCTTTCCCTTCC.GGcc > 1:333941/1‑101 (MQ=2)
ggggggTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGCCCgg > 2:132787/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGCCCgg > 1:2504441/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG..GG...T...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGCCCgc > 2:3057275/1‑100 (MQ=21)
gggggTGAAG...CCCCCCGCG..GG...G...CG.CCTC.CTGCTTGCCCG.AGGC.G.ACACCTTCCCCCCTTGAGACTCTTGCGTGCGCGGGTCCCTTTGTCTCTCTGGCCCgg > 2:3685466/1‑101 (MQ=0)
|||||
CAACAGGCAAGGGCCCCGCTTTTCCT.AGGCAAAATACGCCCTTCTTTCTTTT.CGGGGGGGCGGGGGGTGAAG...CCCCCC.....GT...C...CG.CCTC.GGGCTTGCCCG.AGGC.G.AAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC.GGCCCGG > NC_014034/1732789‑1732947
Base quality scores:
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 18 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|