Desulfovibrio vulgaris Hildenborough Module 22 Residual: 0.48

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Summary

Residual: 0.48 Score: -44.7161 version: dvh_cmonkey_11_Mar_02

Members

DVU0043 Flagellar biosynthetic protein FliQ

Details for DVU0043 - Flagellar biosynthetic protein FliQ

GO Terms: GO:0044780, GO:0016021, GO:0009306

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0043

Tuberculist Genomic Region

DVU1443 Flagellar hook protein FlgE

Details for DVU1443 - Flagellar hook protein FlgE

GO Terms: GO:0030694, GO:0071973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1443

Tuberculist Genomic Region

DVU0307 Flagella basal body rod domain protein

Details for DVU0307 - Flagella basal body rod domain protein

GO Terms: GO:0030694, GO:0071973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0307

Tuberculist Genomic Region

DVU1444 Basal-body rod modification protein FlgD

Details for DVU1444 - Basal-body rod modification protein FlgD

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1444

Tuberculist Genomic Region

DVU0309 Transcriptional regulator, LysR family

Details for DVU0309 - Transcriptional regulator, LysR family

GO Terms: GO:0003677, GO:0003700, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0309

Tuberculist Genomic Region

DVU1805 GGDEF domain protein

Details for DVU1805 - GGDEF domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1805

Tuberculist Genomic Region

DVU0318 TPR domain protein

Details for DVU0318 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0318

Tuberculist Genomic Region

DVU1963 Uncharacterized protein

Details for DVU1963 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1963

Tuberculist Genomic Region

DVU0320 Uncharacterized protein

Details for DVU0320 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0320

Tuberculist Genomic Region

DVU2065 Uncharacterized protein

Details for DVU2065 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2065

Tuberculist Genomic Region

DVU0325 Hydrogenase expression/formation protein HypD

Details for DVU0325 - Hydrogenase expression/formation protein HypD

GO Terms: GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0325

Tuberculist Genomic Region

DVU2991 Uncharacterized protein

Details for DVU2991 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2991

Tuberculist Genomic Region

DVU0409 Uncharacterized protein

Details for DVU0409 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0409

Tuberculist Genomic Region

DVU3001 Conserved domain protein

Details for DVU3001 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3001

Tuberculist Genomic Region

DVU0410 Uncharacterized protein

Details for DVU0410 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0410

Tuberculist Genomic Region

DVU3002 Conserved domain protein

Details for DVU3002 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3002

Tuberculist Genomic Region

DVU0518 Uncharacterized protein

Details for DVU0518 - Uncharacterized protein

GO Terms: GO:0044780

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0518

Tuberculist Genomic Region

DVU3004 Radical SAM domain protein

Details for DVU3004 - Radical SAM domain protein

GO Terms: GO:0051539, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3004

Tuberculist Genomic Region

DVU0520 Flagellar hook-associated protein FlgL, putative

Details for DVU0520 - Flagellar hook-associated protein FlgL, putative

GO Terms: GO:0009424, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0520

Tuberculist Genomic Region

DVU3005 Aminotransferase, DegT/DnrJ/EryC1/StrS family

Details for DVU3005 - Aminotransferase, DegT/DnrJ/EryC1/StrS family

GO Terms: GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3005

Tuberculist Genomic Region

DVU0862 Uncharacterized protein

Details for DVU0862 - Uncharacterized protein

GO Terms: GO:0009288

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0862

Tuberculist Genomic Region

DVU3006 Polysaccharide biosynthesis protein/methyltransferase, putative

Details for DVU3006 - Polysaccharide biosynthesis protein/methyltransferase, putative

GO Terms: GO:0009103, GO:0008168

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3006

Tuberculist Genomic Region

DVU0863 Flagellar hook-associated protein 2, putative

Details for DVU0863 - Flagellar hook-associated protein 2, putative

GO Terms: GO:0009424, GO:0007155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0863

Tuberculist Genomic Region

DVU3014 Asparagine synthetase, glutamine-hydrolyzing

Details for DVU3014 - Asparagine synthetase, glutamine-hydrolyzing

GO Terms: GO:0006529, GO:0004066

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3014

Tuberculist Genomic Region

DVU1441 Flagellin

Details for DVU1441 - Flagellin

GO Terms: GO:0009420, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1441

Tuberculist Genomic Region

DVU3232 Flagellar biosynthetic protein FlhA

Details for DVU3232 - Flagellar biosynthetic protein FlhA

GO Terms: GO:0044780, GO:0016021, GO:0009306

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3232

Tuberculist Genomic Region

Displaying 1 - 26 of 26

Motifs

Motif 1: e-value: 0.00014 e-value: 8.7

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0063

Transcriptional regulator, MarR family
 down-regulates -0.11

DVU0063

DVU0606

Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family
 down-regulates -0.14

DVU0606

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0022607 cellular component assembly 18 0.24 3 0.0009
BP GO:0044085 cellular component biogenesis 21 0.28 3 0.0015
BP GO:0016043 cellular component organization 28 0.38 3 0.0036
BP GO:0071840 cellular component organization or bioge... 31 0.42 3 0.0048
BP GO:0044763 single-organism cellular process 194 2.63 5 0.0392
BP GO:0008653 lipopolysaccharide metabolic process 3 0.04 1 0.0402
BP GO:0009103 lipopolysaccharide biosynthetic process 3 0.04 1 0.0402
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005623 cell 145 2.21 6 0.0024
CC GO:0044464 cell part 145 2.21 6 0.0024
CC GO:0030694 bacterial-type flagellum basal body, rod 6 0.09 2 0.0028
CC GO:0005622 intracellular 104 1.59 5 0.0057
CC GO:0044424 intracellular part 104 1.59 5 0.0057
CC GO:0009425 bacterial-type flagellum basal body 13 0.20 2 0.0141
CC GO:0009420 bacterial-type flagellum filament 3 0.05 1 0.0452
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030170 pyridoxal phosphate binding 10 0.03 1 0.0310

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