Desulfovibrio vulgaris Hildenborough Module 34 Residual: 0.44 | Syntrophy Portal

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Summary

Residual: 0.44 Score: -64.7281 version: dvh_cmonkey_11_Mar_02

Members

DVU0273 Uncharacterized protein Details for DVU0273 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0273 Tuberculist Genomic Region	DVU2573 Uncharacterized protein Details for DVU2573 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2573 Tuberculist Genomic Region
DVU0303 Uncharacterized protein Details for DVU0303 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0303 Tuberculist Genomic Region	DVU2574 Ferrous ion transport protein, putative Details for DVU2574 - Ferrous ion transport protein, putative GO Terms: GO:0046914 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2574 Tuberculist Genomic Region
DVU0304 Uncharacterized protein Details for DVU0304 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0304 Tuberculist Genomic Region	DVU2680 Flavodoxin Details for DVU2680 - Flavodoxin GO Terms: GO:0010181, GO:0009055, GO:0005506, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2680 Tuberculist Genomic Region
DVU0762 Uncharacterized protein Details for DVU0762 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0762 Tuberculist Genomic Region	DVU2681 Uncharacterized protein Details for DVU2681 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2681 Tuberculist Genomic Region
DVU0763 GGDEF domain protein Details for DVU0763 - GGDEF domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0763 Tuberculist Genomic Region	DVU3124 Uncharacterized protein Details for DVU3124 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3124 Tuberculist Genomic Region
DVU2377 Uncharacterized protein Details for DVU2377 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2377 Tuberculist Genomic Region	DVU3331 Uncharacterized protein Details for DVU3331 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3331 Tuberculist Genomic Region
DVU2378 Transcriptional regulator, AraC family Details for DVU2378 - Transcriptional regulator, AraC family GO Terms: GO:0043565, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2378 Tuberculist Genomic Region	DVU3332 Heavy metal translocating P-type ATPase Details for DVU3332 - Heavy metal translocating P-type ATPase GO Terms: GO:0005524, GO:0019829, GO:0016021, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3332 Tuberculist Genomic Region
DVU2383 TonB dependent receptor domain protein Details for DVU2383 - TonB dependent receptor domain protein GO Terms: GO:0016020, GO:0004872, GO:0006810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2383 Tuberculist Genomic Region	DVU3333 Uncharacterized protein Details for DVU3333 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3333 Tuberculist Genomic Region
DVU2564 8-amino-7-oxononanoate synthase Details for DVU2564 - 8-amino-7-oxononanoate synthase GO Terms: GO:0008710, GO:0009058, GO:0030170 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2564 Tuberculist Genomic Region	DVU2381 Uncharacterized protein Details for DVU2381 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2381 Tuberculist Genomic Region
DVU2571 Ferrous iron transport protein B Details for DVU2571 - Ferrous iron transport protein B GO Terms: GO:0005525, GO:0015093, GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2571 Tuberculist Genomic Region	DVU3330 Uncharacterized protein Details for DVU3330 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3330 Tuberculist Genomic Region
DVU2572 Ferrous iron transport protein A, putative Details for DVU2572 - Ferrous iron transport protein A, putative GO Terms: GO:0046914 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2572 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.0000000000000014 Motif 2:

e-value: 0.15

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]	up-regulates	0.13	Carbon Monoxide
DVU0118 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.22	DVU0118
DVU0525 Transcriptional regulator, MarR family	up-regulates	0.15	DVU0525
DVU0653 Sigma-54 dependent transcriptional regulator, putative/response regulator	down-regulates	-0.26	DVU0653
DVU0679 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.22	DVU0679
DVU0942 Transcriptional regulator, Fur family	down-regulates	-0.69	DVU0942
DVU1744 DNA-binding protein	up-regulates	0.11	DVU1744
DVU3080 Transcriptional regulator, putative	up-regulates	0.21	DVU3080
DVU3313 Transcriptional regulator, LysR family	up-regulates	0.11	DVU3313

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0046914	transition metal ion binding	17	0.09	2	0.0033
MF	GO:0046872	metal ion binding	51	0.28	2	0.0287
MF	GO:0043169	cation binding	53	0.29	2	0.0309
MF	GO:0043167	ion binding	422	2.31	5	0.0426

Essentiality

Comments

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