Desulfovibrio vulgaris Hildenborough Module 41 Residual: 0.35 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.35 Score: -70.9448 version: dvh_cmonkey_11_Mar_02

Members

DVU0115 Shikimate dehydrogenase Details for DVU0115 - Shikimate dehydrogenase GO Terms: GO:0050661, GO:0009073, GO:0009423, GO:0004764, GO:0019632 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0115 Tuberculist Genomic Region	DVU2701 Uncharacterized protein Details for DVU2701 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2701 Tuberculist Genomic Region
DVU0366 5-formyltetrahydrofolate cyclo-ligase Details for DVU0366 - 5-formyltetrahydrofolate cyclo-ligase GO Terms: GO:0030272, GO:0005524, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0366 Tuberculist Genomic Region	DVU2860 Uncharacterized protein Details for DVU2860 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2860 Tuberculist Genomic Region
DVU1735 Uncharacterized protein Details for DVU1735 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1735 Tuberculist Genomic Region	DVU3139 Bacterial extracellular solute-binding protein, family 3 Details for DVU3139 - Bacterial extracellular solute-binding protein, family 3 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3139 Tuberculist Genomic Region
DVU2578 Response regulator Details for DVU2578 - Response regulator GO Terms: GO:0000160, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2578 Tuberculist Genomic Region	DVU0081 Sensory box histidine kinase/response regulator Details for DVU0081 - Sensory box histidine kinase/response regulator GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0081 Tuberculist Genomic Region
DVU2614 Uncharacterized protein Details for DVU2614 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2614 Tuberculist Genomic Region	DVU2865 Lipoprotein, putative Details for DVU2865 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2865 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 1700 Motif 2:

e-value: 11000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]	up-regulates	0.23	Co-culture Ancestor
DVU0063 Transcriptional regulator, MarR family	down-regulates	-0.12	DVU0063
DVU0230 Transcriptional regulator cII, putative	up-regulates	0.12	DVU0230
DVU1083 Phosphate regulon transcriptional regulator PhoB	up-regulates	0.13	DVU1083
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.11	DVU2114
DVU2799 Transcriptional regulator, MarR family	down-regulates	-0.11	DVU2799
[field_regulator_taxonomy_regulat_1]	up-regulates	0.14	Formate

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0050661	NADP binding	5	0.01	1	0.0078
MF	GO:0016879	ligase activity, forming carbon-nitrogen...	6	0.01	1	0.0093
MF	GO:0016874	ligase activity	10	0.02	1	0.0156

Essentiality

Comments

Log in to post comments