Desulfovibrio vulgaris Hildenborough Module 88 Residual: 0.39

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Summary

Residual: 0.39 Score: -51.4993 version: dvh_cmonkey_11_Mar_02

Members

DVU0106 Glutamine ABC transporter, permease protein

Details for DVU0106 - Glutamine ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0106

Tuberculist Genomic Region

DVU2372 Uncharacterized protein

Details for DVU2372 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2372

Tuberculist Genomic Region

DVU0321 Type III pantothenate kinase

Details for DVU0321 - Type III pantothenate kinase

GO Terms: GO:0005524, GO:0015937, GO:0005737, GO:0046872, GO:0004594

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0321

Tuberculist Genomic Region

DVU2607 Uncharacterized protein

Details for DVU2607 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2607

Tuberculist Genomic Region

DVU0945 Histidine kinase

Details for DVU0945 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0945

Tuberculist Genomic Region

DVU2608 Chemotaxis protein MotA

Details for DVU2608 - Chemotaxis protein MotA

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2608

Tuberculist Genomic Region

DVU1027 Uncharacterized protein

Details for DVU1027 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1027

Tuberculist Genomic Region

DVU3085 Uncharacterized protein

Details for DVU3085 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3085

Tuberculist Genomic Region

DVU1406 Phosphoribosylformylglycinamidine cyclo-ligase

Details for DVU1406 - Phosphoribosylformylglycinamidine cyclo-ligase

GO Terms: GO:0006189, GO:0005524, GO:0005737, GO:0004641

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1406

Tuberculist Genomic Region

DVU3088 ATP-dependent RNA helicase, DEAD/DEAH box family

Details for DVU3088 - ATP-dependent RNA helicase, DEAD/DEAH box family

GO Terms: GO:0005524, GO:0004386, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3088

Tuberculist Genomic Region

DVU1652 HIT family protein

Details for DVU1652 - HIT family protein

GO Terms: GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1652

Tuberculist Genomic Region

DVU2650 Uncharacterized protein

Details for DVU2650 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2650

Tuberculist Genomic Region

DVU1778 Cation efflux family protein

Details for DVU1778 - Cation efflux family protein

GO Terms: GO:0008324, GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1778

Tuberculist Genomic Region

DVU3149 Signal peptide peptidase SppA, 36K type

Details for DVU3149 - Signal peptide peptidase SppA, 36K type

GO Terms: GO:0004252

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3149

Tuberculist Genomic Region

Displaying 1 - 14 of 14

Motifs

Motif 1: e-value: 980 e-value: 2600

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU2836

Uncharacterized protein
 up-regulates 0.17

DVU2836

DVU2956

Sigma-54 dependent transcriptional regulator
 up-regulates 0.11

DVU2956

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.26

DVU3142

DVU3255

Transcriptional regulator, CopG family
 up-regulates 0.27

DVU3255

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006188 IMP biosynthetic process 11 0.03 1 0.0300
BP GO:0006189 'de novo' IMP biosynthetic process 11 0.03 1 0.0300
BP GO:0046040 IMP metabolic process 11 0.03 1 0.0300
BP GO:0006164 purine nucleotide biosynthetic process 17 0.05 1 0.0460
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.05 1 0.0460
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.05 1 0.0460
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.05 1 0.0460
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.05 1 0.0460
BP GO:0006163 purine nucleotide metabolic process 18 0.05 1 0.0490
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.05 1 0.0490
BP GO:0009150 purine ribonucleotide metabolic process 18 0.05 1 0.0490
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.05 1 0.0490
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0004252 serine-type endopeptidase activity 3 0.01 1 0.0140
MF GO:0008236 serine-type peptidase activity 5 0.02 1 0.0230
MF GO:0017171 serine hydrolase activity 5 0.02 1 0.0230
MF GO:0004175 endopeptidase activity 7 0.03 1 0.0320
MF GO:0008324 cation transmembrane transporter activit... 7 0.03 1 0.0320

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