Desulfovibrio vulgaris Hildenborough Module 104 Residual: 0.33

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.33 Score: -83.111 version: dvh_cmonkey_11_Mar_02

Members

DVU0241 MTH1175-like domain family protein

Details for DVU0241 - MTH1175-like domain family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0241

Tuberculist Genomic Region

DVU2078 Chemotaxis response regulator protein-glutamate methylesterase of group 2 operon

Details for DVU2078 - Chemotaxis response regulator protein-glutamate methylesterase of group 2 operon

GO Terms: GO:0006935, GO:0005737, GO:0000156, GO:0008984

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2078

Tuberculist Genomic Region

DVU0811 Chaperone protein DnaK

Details for DVU0811 - Chaperone protein DnaK

GO Terms: GO:0005524, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0811

Tuberculist Genomic Region

DVU2079 Histidine kinase

Details for DVU2079 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2079

Tuberculist Genomic Region

DVU1430 Peptidase, M16 family

Details for DVU1430 - Peptidase, M16 family

GO Terms: GO:0046872, GO:0004222

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1430

Tuberculist Genomic Region

DVU2310 Metallo-beta-lactamase family protein

Details for DVU2310 - Metallo-beta-lactamase family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2310

Tuberculist Genomic Region

DVU1468 Peptidase/PDZ domain protein

Details for DVU1468 - Peptidase/PDZ domain protein

GO Terms: GO:0004252

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1468

Tuberculist Genomic Region

DVU2441 Heat shock protein, Hsp20 family

Details for DVU2441 - Heat shock protein, Hsp20 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2441

Tuberculist Genomic Region

DVU1976 60 kDa chaperonin

Details for DVU1976 - 60 kDa chaperonin

GO Terms: GO:0005524, GO:0005737, GO:0042026

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1976

Tuberculist Genomic Region

DVU2442 Heat shock protein, Hsp20 family

Details for DVU2442 - Heat shock protein, Hsp20 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2442

Tuberculist Genomic Region

DVU1977 10 kDa chaperonin

Details for DVU1977 - 10 kDa chaperonin

GO Terms: GO:0005524, GO:0005737, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1977

Tuberculist Genomic Region

DVU2643 Chaperone protein HtpG

Details for DVU2643 - Chaperone protein HtpG

GO Terms: GO:0005524, GO:0005737, GO:0006457, GO:0006950

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2643

Tuberculist Genomic Region

Displaying 1 - 12 of 12

Motifs

Motif 1: e-value: 140 e-value: 930

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0749

DNA-binding response regulator
 down-regulates -0.16

DVU0749

DVU0813

Heat-inducible transcription repressor HrcA
 up-regulates 0.40

DVU0813

DVU2106

Sigma-54 dependent transcriptional regulator
 down-regulates -0.12

DVU2106

DVU2547

Transcriptional regulator, putative
 up-regulates 0.16

DVU2547

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006935 chemotaxis 18 0.05 1 0.0490
BP GO:0042330 taxis 18 0.05 1 0.0490
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0043167 ion binding 422 2.31 6 0.0063
MF GO:0005524 ATP binding 301 1.64 5 0.0096
MF GO:0032559 adenyl ribonucleotide binding 303 1.66 5 0.0098
MF GO:0030554 adenyl nucleotide binding 304 1.66 5 0.0100
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 1.78 5 0.0135
MF GO:0001882 nucleoside binding 327 1.79 5 0.0139
MF GO:0001883 purine nucleoside binding 327 1.79 5 0.0139
MF GO:0032549 ribonucleoside binding 327 1.79 5 0.0139
MF GO:0032550 purine ribonucleoside binding 327 1.79 5 0.0139
MF GO:0032555 purine ribonucleotide binding 332 1.81 5 0.0149
MF GO:0017076 purine nucleotide binding 333 1.82 5 0.0151
MF GO:0004252 serine-type endopeptidase activity 3 0.02 1 0.0163
MF GO:0032553 ribonucleotide binding 345 1.89 5 0.0177
MF GO:0097367 carbohydrate derivative binding 345 1.89 5 0.0177
MF GO:0043168 anion binding 371 2.03 5 0.0244
MF GO:0000166 nucleotide binding 377 2.06 5 0.0261
MF GO:1901265 nucleoside phosphate binding 377 2.06 5 0.0261
MF GO:0008236 serine-type peptidase activity 5 0.03 1 0.0271
MF GO:0017171 serine hydrolase activity 5 0.03 1 0.0271
MF GO:0036094 small molecule binding 383 2.09 5 0.0280
MF GO:0004175 endopeptidase activity 7 0.04 1 0.0377

Comments

Log in to post comments