Desulfovibrio vulgaris Hildenborough Module 110 Residual: 0.48 | Syntrophy Portal

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Summary

Residual: 0.48 Score: -40.9883 version: dvh_cmonkey_11_Mar_02

Members

DVU0298 Uncharacterized protein Details for DVU0298 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0298 Tuberculist Genomic Region	DVU0727 Uncharacterized protein Details for DVU0727 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0727 Tuberculist Genomic Region
DVU0421 Agmatinase, putative Details for DVU0421 - Agmatinase, putative GO Terms: GO:0016813, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0421 Tuberculist Genomic Region	DVU0728 Uncharacterized protein Details for DVU0728 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0728 Tuberculist Genomic Region
DVU0866 1-deoxy-D-xylulose 5-phosphate reductoisomerase Details for DVU0866 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO Terms: GO:0030604, GO:0070402, GO:0019288, GO:0046872, GO:0016114 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0866 Tuberculist Genomic Region	DVU0756 TPR domain protein Details for DVU0756 - TPR domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0756 Tuberculist Genomic Region
DVU0955 Alanine racemase Details for DVU0955 - Alanine racemase GO Terms: GO:0030632, GO:0008784, GO:0030170 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0955 Tuberculist Genomic Region	DVU0801 UvrABC system protein C Details for DVU0801 - UvrABC system protein C GO Terms: GO:0003677, GO:0009432, GO:0005737, GO:0009381, GO:0009380, GO:0006289 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0801 Tuberculist Genomic Region
DVU1554 Radical SAM domain protein Details for DVU1554 - Radical SAM domain protein GO Terms: GO:0051539, GO:0003824, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1554 Tuberculist Genomic Region	DVU0985 Uncharacterized protein Details for DVU0985 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0985 Tuberculist Genomic Region
DVU1644 Permease, putative Details for DVU1644 - Permease, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1644 Tuberculist Genomic Region	DVU1013 Type I secretion outer membrane protein, TolC family Details for DVU1013 - Type I secretion outer membrane protein, TolC family GO Terms: GO:0019867, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1013 Tuberculist Genomic Region
DVU1645 Transcriptional regulator, ArsR family Details for DVU1645 - Transcriptional regulator, ArsR family GO Terms: GO:0003677, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1645 Tuberculist Genomic Region	DVU1151 Uncharacterized protein Details for DVU1151 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1151 Tuberculist Genomic Region
DVU2282 Uncharacterized protein Details for DVU2282 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2282 Tuberculist Genomic Region	DVU1628 RNA polymerase sigma-54 factor Details for DVU1628 - RNA polymerase sigma-54 factor GO Terms: GO:0003677, GO:0003899, GO:0006352, GO:0003700, GO:0016987 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1628 Tuberculist Genomic Region
DVU2548 FMN-dependent NADH-azoreductase Details for DVU2548 - FMN-dependent NADH-azoreductase GO Terms: GO:0010181, GO:0008752, GO:0009055, GO:0016652, GO:0016661 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2548 Tuberculist Genomic Region	DVU2309 Methyl-accepting chemotaxis protein, putative Details for DVU2309 - Methyl-accepting chemotaxis protein, putative GO Terms: GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2309 Tuberculist Genomic Region
DVU2662 Uncharacterized protein Details for DVU2662 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2662 Tuberculist Genomic Region	DVU2362 Thiamine-phosphate synthase Details for DVU2362 - Thiamine-phosphate synthase GO Terms: GO:0000287, GO:0009228, GO:0009229, GO:0004789 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2362 Tuberculist Genomic Region
DVU3079 Glyoxalase family protein Details for DVU3079 - Glyoxalase family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3079 Tuberculist Genomic Region	DVU2439 Efflux transporter, RND family, MFP subunit Details for DVU2439 - Efflux transporter, RND family, MFP subunit GO Terms: GO:0016020, GO:0055085 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2439 Tuberculist Genomic Region
DVU3135 Flavodoxin-like fold domain protein Details for DVU3135 - Flavodoxin-like fold domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3135 Tuberculist Genomic Region	DVU3316 Dihydroorotate dehydrogenase Details for DVU3316 - Dihydroorotate dehydrogenase GO Terms: GO:0006207, GO:0006222, GO:0005737, GO:0004152 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3316 Tuberculist Genomic Region
DVU3136 Nitroreductase family protein Details for DVU3136 - Nitroreductase family protein GO Terms: GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3136 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.0031 Motif 2:

e-value: 66

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0813 Heat-inducible transcription repressor HrcA	up-regulates	0.53	DVU0813
DVU1730 DNA-binding protein	up-regulates	0.35	DVU1730

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:1901566	organonitrogen compound biosynthetic pro...	68	0.37	2	0.0336
BP	GO:0044711	single-organism biosynthetic process	82	0.44	2	0.0489

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0000287	magnesium ion binding	3	0.02	1	0.0210

Essentiality

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