Desulfovibrio vulgaris Hildenborough Module 122 Residual: 0.49

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.49 Score: -35.7922 version: dvh_cmonkey_11_Mar_02

Members

DVU0033 Isochorismatase family protein

Details for DVU0033 - Isochorismatase family protein

GO Terms: GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0033

Tuberculist Genomic Region

DVU2445 Uncharacterized protein

Details for DVU2445 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2445

Tuberculist Genomic Region

DVU0122 Uncharacterized protein

Details for DVU0122 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0122

Tuberculist Genomic Region

DVU2516 CBS domain protein

Details for DVU2516 - CBS domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2516

Tuberculist Genomic Region

DVU0123 UPF0324 membrane protein DVU_0123

Details for DVU0123 - UPF0324 membrane protein DVU_0123

GO Terms: GO:0016021, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0123

Tuberculist Genomic Region

DVU0523 Negative regulator of flagellin synthesis FlgM

Details for DVU0523 - Negative regulator of flagellin synthesis FlgM

GO Terms: GO:0045892

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0523

Tuberculist Genomic Region

DVU0583 Lipoprotein, putative

Details for DVU0583 - Lipoprotein, putative

GO Terms: GO:0006865, GO:0030288

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0583

Tuberculist Genomic Region

DVU0524 Uncharacterized protein

Details for DVU0524 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0524

Tuberculist Genomic Region

DVU0598 Carbon starvation protein A, putative

Details for DVU0598 - Carbon starvation protein A, putative

GO Terms: GO:0009267, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0598

Tuberculist Genomic Region

DVU0976 Response regulator

Details for DVU0976 - Response regulator

GO Terms: GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0976

Tuberculist Genomic Region

DVU0599 Carbon starvation protein A, putative

Details for DVU0599 - Carbon starvation protein A, putative

GO Terms: GO:0009267, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0599

Tuberculist Genomic Region

DVU0977 Uncharacterized protein

Details for DVU0977 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0977

Tuberculist Genomic Region

DVU0935 Methyl-accepting chemotaxis protein

Details for DVU0935 - Methyl-accepting chemotaxis protein

GO Terms: GO:0016021, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0935

Tuberculist Genomic Region

DVU1073 Conserved domain protein

Details for DVU1073 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1073

Tuberculist Genomic Region

DVU0942 Transcriptional regulator, Fur family

Details for DVU0942 - Transcriptional regulator, Fur family

GO Terms: GO:0003677, GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0942

Tuberculist Genomic Region

DVU1857 Methyl-accepting chemotaxis protein

Details for DVU1857 - Methyl-accepting chemotaxis protein

GO Terms: GO:0016021, GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1857

Tuberculist Genomic Region

DVU1241 Uncharacterized protein

Details for DVU1241 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1241

Tuberculist Genomic Region

DVU1869 Methyl-accepting chemotaxis protein

Details for DVU1869 - Methyl-accepting chemotaxis protein

GO Terms: GO:0016021, GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1869

Tuberculist Genomic Region

DVU1786 GGDEF domain protein

Details for DVU1786 - GGDEF domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1786

Tuberculist Genomic Region

DVU2948 Bacterial flagellin N-terminal domain protein

Details for DVU2948 - Bacterial flagellin N-terminal domain protein

GO Terms: GO:0009288, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2948

Tuberculist Genomic Region

DVU1854 Uncharacterized protein

Details for DVU1854 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1854

Tuberculist Genomic Region

DVU2952 Membrane protein, putative

Details for DVU2952 - Membrane protein, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2952

Tuberculist Genomic Region

DVU1880 Uncharacterized protein

Details for DVU1880 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1880

Tuberculist Genomic Region

DVU3125 Lipoprotein, putative

Details for DVU3125 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3125

Tuberculist Genomic Region

DVU2444 Flagellin

Details for DVU2444 - Flagellin

GO Terms: GO:0009420, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2444

Tuberculist Genomic Region

DVU3218 Pyrazinamidase/nicotinamidase

Details for DVU3218 - Pyrazinamidase/nicotinamidase

GO Terms: GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3218

Tuberculist Genomic Region

Displaying 1 - 26 of 26

Motifs

Motif 1: e-value: 0.0053 e-value: 42

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1949

Nif-specific regulatory protein
 down-regulates -0.13

DVU1949

DVU2788

Transcriptional regulator, ArsR family
 up-regulates 0.18

DVU2788

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009991 response to extracellular stimulus 3 0.04 2 0.0004
BP GO:0031668 cellular response to extracellular stimu... 3 0.04 2 0.0004
BP GO:0071496 cellular response to external stimulus 3 0.04 2 0.0004
BP GO:0033554 cellular response to stress 8 0.11 2 0.0040
BP GO:0007154 cell communication 39 0.53 3 0.0094
BP GO:0051716 cellular response to stimulus 44 0.60 3 0.0134
BP GO:0006950 response to stress 22 0.30 2 0.0305
BP GO:0009605 response to external stimulus 23 0.31 2 0.0332

Comments

Log in to post comments