Desulfovibrio vulgaris Hildenborough Module 133 Residual: 0.48 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.48 Score: -59.3844 version: dvh_cmonkey_11_Mar_02

Members

DVU0529 Protein rrf2 Details for DVU0529 - Protein rrf2 GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0529 Tuberculist Genomic Region	DVU1506 Uncharacterized protein Details for DVU1506 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1506 Tuberculist Genomic Region
DVU0530 Protein rrf1 Details for DVU0530 - Protein rrf1 GO Terms: GO:0000160, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0530 Tuberculist Genomic Region	DVU2204 Tryptophanase Details for DVU2204 - Tryptophanase GO Terms: GO:0030170, GO:0009034 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2204 Tuberculist Genomic Region
DVU0531 Protein DVU_0531 Details for DVU0531 - Protein DVU_0531 GO Terms: GO:0051539, GO:0005737, GO:0046872, GO:0055114 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0531 Tuberculist Genomic Region	DVU2814 Uncharacterized protein Details for DVU2814 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2814 Tuberculist Genomic Region
DVU0532 Protein DVU_0532 Details for DVU0532 - Protein DVU_0532 GO Terms: GO:0016021, GO:0046872, GO:0005886 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0532 Tuberculist Genomic Region	DVU2815 Outer membrane efflux protein Details for DVU2815 - Outer membrane efflux protein GO Terms: GO:0008289, GO:0016020, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2815 Tuberculist Genomic Region
DVU0535 Protein DVU_0535 Details for DVU0535 - Protein DVU_0535 GO Terms: GO:0051539, GO:0016021, GO:0046872, GO:0055114, GO:0005886 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0535 Tuberculist Genomic Region	DVU2816 Multidrug resistance protein Details for DVU2816 - Multidrug resistance protein GO Terms: GO:0016021, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2816 Tuberculist Genomic Region
DVU0536 High-molecular-weight cytochrome c Details for DVU0536 - High-molecular-weight cytochrome c GO Terms: GO:0009055, GO:0020037, GO:0046872, GO:0055114, GO:0042597 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0536 Tuberculist Genomic Region	DVU2817 Multidrug resistance protein Details for DVU2817 - Multidrug resistance protein GO Terms: GO:0016020, GO:0055085 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2817 Tuberculist Genomic Region
DVU0878 DnaK suppressor protein, putative Details for DVU0878 - DnaK suppressor protein, putative GO Terms: GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0878 Tuberculist Genomic Region	DVU2818 Uncharacterized protein Details for DVU2818 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2818 Tuberculist Genomic Region
DVU0926 Uncharacterized protein Details for DVU0926 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0926 Tuberculist Genomic Region	DVU2819 Transcriptional regulator, TetR family Details for DVU2819 - Transcriptional regulator, TetR family GO Terms: GO:0003677, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2819 Tuberculist Genomic Region
DVU0929 GTPase Obg Details for DVU0929 - GTPase Obg GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0000287 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0929 Tuberculist Genomic Region	DVU0930 Glutamate 5-kinase Details for DVU0930 - Glutamate 5-kinase GO Terms: GO:0005524, GO:0055129, GO:0003723, GO:0005737, GO:0004349 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0930 Tuberculist Genomic Region
DVU1505 Holin, putative Details for DVU1505 - Holin, putative GO Terms: GO:0004519, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1505 Tuberculist Genomic Region	DVU1755 Uncharacterized protein Details for DVU1755 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1755 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.00000092 Motif 2:

e-value: 0.00037

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0230 Transcriptional regulator cII, putative	up-regulates	0.11	DVU0230
DVU0539 Sigma-54 dependent DNA-binding response regulator	up-regulates	0.13	DVU0539
DVU1645 Transcriptional regulator, ArsR family	up-regulates	0.13	DVU1645
DVU1967 Transcriptional regulator, rrf2 protein, putative	up-regulates	0.11	DVU1967
DVU2097 Transcriptional regulator, putative	down-regulates	-0.14	DVU2097
DVU2567 Uncharacterized protein	up-regulates	0.12	DVU2567
[field_regulator_taxonomy_regulat_1]	up-regulates	8.17	Oxygen

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0008289	lipid binding	3	0.03	1	0.0260
MF	GO:0004519	endonuclease activity	5	0.04	1	0.0420

Essentiality

Comments

Log in to post comments