Desulfovibrio vulgaris Hildenborough Module 135 Residual: 0.47 | Syntrophy Portal

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Summary

Residual: 0.47 Score: -37.3458 version: dvh_cmonkey_11_Mar_02

Members

DVU0299 Anaerobic ribonucleoside-triphosphate reductase, putative Details for DVU0299 - Anaerobic ribonucleoside-triphosphate reductase, putative GO Terms: GO:0005524, GO:0006260, GO:0008998 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0299 Tuberculist Genomic Region	DVU3016 B12 binding domain protein/radical SAM domain protein Details for DVU3016 - B12 binding domain protein/radical SAM domain protein GO Terms: GO:0003824, GO:0031419, GO:0051536, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3016 Tuberculist Genomic Region
DVU0300 Radical SAM domain protein Details for DVU0300 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0300 Tuberculist Genomic Region	DVU0079 ZIP zinc transporter family protein Details for DVU0079 - ZIP zinc transporter family protein GO Terms: GO:0016020, GO:0046873 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0079 Tuberculist Genomic Region
DVU0570 Uncharacterized protein Details for DVU0570 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0570 Tuberculist Genomic Region	DVU0328 Glycosyl transferase, group 1 family protein Details for DVU0328 - Glycosyl transferase, group 1 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0328 Tuberculist Genomic Region
DVU0677 Transglycosylase domain protein Details for DVU0677 - Transglycosylase domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0677 Tuberculist Genomic Region	DVU0691 Membrane protein, putative Details for DVU0691 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0691 Tuberculist Genomic Region
DVU1440 Ribonuclease 3 Details for DVU1440 - Ribonuclease 3 GO Terms: GO:0005737, GO:0006397, GO:0046872, GO:0019843, GO:0016075, GO:0006364, GO:0004525, GO:0008033 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1440 Tuberculist Genomic Region	DVU1004 Membrane protein, putative Details for DVU1004 - Membrane protein, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1004 Tuberculist Genomic Region
DVU1532 Phosphopantetheine adenylyltransferase Details for DVU1532 - Phosphopantetheine adenylyltransferase GO Terms: GO:0005524, GO:0015937, GO:0005737, GO:0004595 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1532 Tuberculist Genomic Region	DVU2373 Outer membrane protein assembly factor BamA Details for DVU2373 - Outer membrane protein assembly factor BamA GO Terms: GO:0043165, GO:0009279, GO:0016021, GO:0051205 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2373 Tuberculist Genomic Region
DVU1548 Outer membrane transport protein, OmpP1/FadL/TodX family Details for DVU1548 - Outer membrane transport protein, OmpP1/FadL/TodX family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1548 Tuberculist Genomic Region	DVU2609 Chemotaxis MotB protein, putative Details for DVU2609 - Chemotaxis MotB protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2609 Tuberculist Genomic Region
DVU1606 Potassium uptake protein, TrkA family Details for DVU1606 - Potassium uptake protein, TrkA family GO Terms: GO:0008324, GO:0006813 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1606 Tuberculist Genomic Region	DVU2779 Extracellular solute-binding protein, putative Details for DVU2779 - Extracellular solute-binding protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2779 Tuberculist Genomic Region
DVU2251 DNA-binding protein Details for DVU2251 - DNA-binding protein GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2251 Tuberculist Genomic Region	DVU3127 Paraquat-inducible protein B Details for DVU3127 - Paraquat-inducible protein B GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3127 Tuberculist Genomic Region
DVU2747 Uncharacterized protein Details for DVU2747 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2747 Tuberculist Genomic Region	DVU3392 Glutamine synthetase, type I Details for DVU3392 - Glutamine synthetase, type I GO Terms: GO:0004356, GO:0006542 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3392 Tuberculist Genomic Region
DVU2933 Response regulator/sensory box/HDIG domain protein Details for DVU2933 - Response regulator/sensory box/HDIG domain protein GO Terms: GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2933 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 1.9 Motif 2:

e-value: 5000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0629 Transcriptional regulator, TetR family	up-regulates	0.11	DVU0629
DVU0653 Sigma-54 dependent transcriptional regulator, putative/response regulator	up-regulates	0.11	DVU0653

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0043163	cell envelope organization	4	0.02	1	0.0220
BP	GO:0043165	Gram-negative-bacterium-type cell outer ...	4	0.02	1	0.0220
BP	GO:0044091	membrane biogenesis	4	0.02	1	0.0220
BP	GO:0044802	single-organism membrane organization	4	0.02	1	0.0220
BP	GO:0061024	membrane organization	4	0.02	1	0.0220
BP	GO:0071709	membrane assembly	4	0.02	1	0.0220
BP	GO:0045229	external encapsulating structure organiz...	9	0.05	1	0.0480

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016879	ligase activity, forming carbon-nitrogen...	6	0.04	1	0.0370
MF	GO:0008324	cation transmembrane transporter activit...	7	0.04	1	0.0430

Essentiality

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