Desulfovibrio vulgaris Hildenborough Module 154 Residual: 0.38 | Syntrophy Portal

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Summary

Residual: 0.38 Score: -65.4259 version: dvh_cmonkey_11_Mar_02

Members

DVU0670 Exopolysaccharide production protein, putative Details for DVU0670 - Exopolysaccharide production protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0670 Tuberculist Genomic Region	DVU2367 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Details for DVU2367 - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO Terms: GO:0008780, GO:0005737, GO:0009245 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2367 Tuberculist Genomic Region
DVU0967 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Details for DVU0967 - Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family GO Terms: GO:0016021, GO:0005886, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0967 Tuberculist Genomic Region	DVU1027 Uncharacterized protein Details for DVU1027 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1027 Tuberculist Genomic Region
DVU1276 Uncharacterized protein Details for DVU1276 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1276 Tuberculist Genomic Region	DVU1294 Uncharacterized protein Details for DVU1294 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1294 Tuberculist Genomic Region
DVU1626 Uncharacterized protein Details for DVU1626 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1626 Tuberculist Genomic Region	DVU1919 Hydrogenase expression/formation protein, putative Details for DVU1919 - Hydrogenase expression/formation protein, putative GO Terms: GO:0008047, GO:0008233 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1919 Tuberculist Genomic Region
DVU1662 Permease, putative Details for DVU1662 - Permease, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1662 Tuberculist Genomic Region	DVU2306 Phosphate transporter family protein Details for DVU2306 - Phosphate transporter family protein GO Terms: GO:0005315, GO:0016020, GO:0006817 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2306 Tuberculist Genomic Region
DVU1671 ABC transporter, ATP-binding protein/permease protein Details for DVU1671 - ABC transporter, ATP-binding protein/permease protein GO Terms: GO:0005524, GO:0042626, GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1671 Tuberculist Genomic Region	DVU2842 Cytosine-specific methyltransferase Details for DVU2842 - Cytosine-specific methyltransferase GO Terms: GO:0003886, GO:0003677, GO:0009307 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2842 Tuberculist Genomic Region
DVU1672 Uncharacterized protein Details for DVU1672 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1672 Tuberculist Genomic Region	DVU2891 Putative nickel-responsive regulator Details for DVU2891 - Putative nickel-responsive regulator GO Terms: GO:0003677, GO:0016151, GO:0010045, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2891 Tuberculist Genomic Region
DVU2356 Membrane protein, putative Details for DVU2356 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2356 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 620 Motif 2:

e-value: 18000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1331 Transcriptional regulator, LysR family	up-regulates	0.13	DVU1331
DVU1754 Uncharacterized protein	down-regulates	-0.13	DVU1754
DVU2275 Sigma-54 dependent transcriptional regulator	up-regulates	0.11	DVU2275
DVU2690 Uncharacterized protein	down-regulates	-0.13	DVU2690
DVU3142 Sigma-54 dependent transcriptional regulator	down-regulates	-0.19	DVU3142
DVU3255 Transcriptional regulator, CopG family	up-regulates	0.23	DVU3255
DVUA0143 Nif-specific regulatory protein	down-regulates	-0.10	DVUA0143

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase acti...	3	0.01	1	0.0140
MF	GO:0005315	inorganic phosphate transmembrane transp...	3	0.01	1	0.0140
MF	GO:0008374	O-acyltransferase activity	3	0.01	1	0.0140
MF	GO:0009008	DNA-methyltransferase activity	3	0.01	1	0.0140
MF	GO:1901677	phosphate transmembrane transporter acti...	3	0.01	1	0.0140
MF	GO:0030234	enzyme regulator activity	6	0.03	1	0.0278
MF	GO:0015291	secondary active transmembrane transport...	8	0.04	1	0.0370
MF	GO:0008757	S-adenosylmethionine-dependent methyltra...	9	0.04	1	0.0415

Essentiality

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