Desulfovibrio vulgaris Hildenborough Module 190 Residual: 0.42 | Syntrophy Portal

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Summary

Residual: 0.42 Score: -55.9514 version: dvh_cmonkey_11_Mar_02

Members

DVU0371 Uncharacterized protein Details for DVU0371 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0371 Tuberculist Genomic Region	DVU1152 Uncharacterized protein Details for DVU1152 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1152 Tuberculist Genomic Region
DVU0554 NAD-dependent epimerase/dehydratase family protein Details for DVU0554 - NAD-dependent epimerase/dehydratase family protein GO Terms: GO:0005975, GO:0050662, GO:0016857 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0554 Tuberculist Genomic Region	DVU1166 Uncharacterized protein Details for DVU1166 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1166 Tuberculist Genomic Region
DVU0555 Uncharacterized protein Details for DVU0555 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0555 Tuberculist Genomic Region	DVU1167 Uncharacterized protein Details for DVU1167 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1167 Tuberculist Genomic Region
DVU0556 ISDvu3, transposase OrfA Details for DVU0556 - ISDvu3, transposase OrfA GO Terms: GO:0003677, GO:0004803, GO:0006313 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0556 Tuberculist Genomic Region	DVU1947 Pyruvate ferredoxin oxidoreductase, gamma subunit, putative Details for DVU1947 - Pyruvate ferredoxin oxidoreductase, gamma subunit, putative GO Terms: GO:0016903 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1947 Tuberculist Genomic Region
DVU0558 Uncharacterized protein Details for DVU0558 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0558 Tuberculist Genomic Region	DVU1948 Uncharacterized protein Details for DVU1948 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1948 Tuberculist Genomic Region
DVU0559 Lipoprotein, putative Details for DVU0559 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0559 Tuberculist Genomic Region	DVU2010 ISD1, transposase OrfB Details for DVU2010 - ISD1, transposase OrfB GO Terms: GO:0015074, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2010 Tuberculist Genomic Region
DVU0560 Conserved domain protein Details for DVU0560 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0560 Tuberculist Genomic Region	DVU2175 Adenine specific DNA methyltransferase, putative Details for DVU2175 - Adenine specific DNA methyltransferase, putative GO Terms: GO:0005524, GO:0003677, GO:0008168, GO:0004518 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2175 Tuberculist Genomic Region
DVU0561 Glycosyl transferase, group 1 family protein Details for DVU0561 - Glycosyl transferase, group 1 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0561 Tuberculist Genomic Region	DVU1692 Uncharacterized protein Details for DVU1692 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1692 Tuberculist Genomic Region
DVU0562 ISD1, transposase OrfA Details for DVU0562 - ISD1, transposase OrfA GO Terms: GO:0003677, GO:0004803, GO:0006313 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0562 Tuberculist Genomic Region	DVU2174 Uncharacterized protein Details for DVU2174 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2174 Tuberculist Genomic Region
DVU1147 Alginate o-acetyltransferase AlgI, putative Details for DVU1147 - Alginate o-acetyltransferase AlgI, putative GO Terms: GO:0042121, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1147 Tuberculist Genomic Region	DVU2177 Uncharacterized protein Details for DVU2177 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2177 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.00000064 Motif 2:

e-value: 1.7

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1142 Transcriptional regulator, putative	down-regulates	-0.15	DVU1142
DVU1584 RNA polymerase sigma factor	up-regulates	0.10	DVU1584
DVU1628 RNA polymerase sigma-54 factor	up-regulates	0.12	DVU1628
DVU2423 Transcriptional regulator, putative	down-regulates	-0.13	DVU2423
DVU2836 Uncharacterized protein	up-regulates	0.19	DVU2836
DVU3186 Uncharacterized protein	up-regulates	0.13	DVU3186
DVUA0143 Nif-specific regulatory protein	down-regulates	-0.15	DVUA0143

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0015074	DNA integration	3	0.03	1	0.0320
BP	GO:0005975	carbohydrate metabolic process	33	0.36	2	0.0420

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016903	oxidoreductase activity, acting on the a...	9	0.02	1	0.0210

Essentiality

Comments

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