Desulfovibrio vulgaris Hildenborough Module 220 Residual: 0.46

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Summary

Residual: 0.46 Score: -59.5116 version: dvh_cmonkey_11_Mar_02

Members

DVU1094 Argininosuccinate lyase

Details for DVU1094 - Argininosuccinate lyase

GO Terms: GO:0042450, GO:0004056, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1094

Tuberculist Genomic Region

DVU3027 Glycolate oxidase, subunit GlcD

Details for DVU3027 - Glycolate oxidase, subunit GlcD

GO Terms: GO:0008762, GO:0050660

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3027

Tuberculist Genomic Region

DVU1095 Argininosuccinate synthase

Details for DVU1095 - Argininosuccinate synthase

GO Terms: GO:0005524, GO:0006526, GO:0004055, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1095

Tuberculist Genomic Region

DVU3028 Glycolate oxidase iron-sulfur subunit

Details for DVU3028 - Glycolate oxidase iron-sulfur subunit

GO Terms: GO:0051539, GO:0046872, GO:0055114

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3028

Tuberculist Genomic Region

DVU1913 Aspartokinase

Details for DVU1913 - Aspartokinase

GO Terms: GO:0016597, GO:0004072, GO:0009089

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1913

Tuberculist Genomic Region

DVU3029 Phosphate acetyltransferase

Details for DVU3029 - Phosphate acetyltransferase

GO Terms: GO:0006085, GO:0005737, GO:0008959

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3029

Tuberculist Genomic Region

DVU3197 Branched-chain amino acid aminotransferase

Details for DVU3197 - Branched-chain amino acid aminotransferase

GO Terms: GO:0052656, GO:0052654, GO:0052655, GO:0009081

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3197

Tuberculist Genomic Region

DVU3030 Acetate kinase

Details for DVU3030 - Acetate kinase

GO Terms: GO:0005524, GO:0008776, GO:0006085, GO:0005737, GO:0000287, GO:0006082

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3030

Tuberculist Genomic Region

DVU3348 Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative

Details for DVU3348 - Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative

GO Terms: GO:0003824, GO:0030976

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3348

Tuberculist Genomic Region

DVU3031 Uncharacterized protein

Details for DVU3031 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3031

Tuberculist Genomic Region

DVU3349 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein

Details for DVU3349 - Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein

GO Terms: GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3349

Tuberculist Genomic Region

DVU3032 Uncharacterized protein

Details for DVU3032 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3032

Tuberculist Genomic Region

DVU3350 Iron-sulfur cluster-binding protein

Details for DVU3350 - Iron-sulfur cluster-binding protein

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3350

Tuberculist Genomic Region

DVU3033 Iron-sulfur cluster-binding protein

Details for DVU3033 - Iron-sulfur cluster-binding protein

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3033

Tuberculist Genomic Region

DVU1653 PolyA polymerase family protein

Details for DVU1653 - PolyA polymerase family protein

GO Terms: GO:0005524, GO:0003723, GO:0006396, GO:0016779

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1653

Tuberculist Genomic Region

DVU3199 Nucleoid-associated protein DVU_3199

Details for DVU3199 - Nucleoid-associated protein DVU_3199

GO Terms: GO:0003677, GO:0043590, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3199

Tuberculist Genomic Region

DVU3024 Uncharacterized protein

Details for DVU3024 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3024

Tuberculist Genomic Region

DVU3200 Recombination protein RecR

Details for DVU3200 - Recombination protein RecR

GO Terms: GO:0003677, GO:0006310, GO:0006281, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3200

Tuberculist Genomic Region

DVU3025 Pyruvate synthase

Details for DVU3025 - Pyruvate synthase

GO Terms: GO:0051539, GO:0022900, GO:0005506, GO:0019164, GO:0030976

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3025

Tuberculist Genomic Region

DVU3235 IMP cyclohydrolase, putative

Details for DVU3235 - IMP cyclohydrolase, putative

GO Terms: GO:0003937, GO:0004643, GO:0006164

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3235

Tuberculist Genomic Region

DVU3026 L-lactate permease family protein

Details for DVU3026 - L-lactate permease family protein

GO Terms: GO:0005887, GO:0015129

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3026

Tuberculist Genomic Region

DVU3347 Pyruvate ferredoxin/flavodoxin oxidoreductase family protein

Details for DVU3347 - Pyruvate ferredoxin/flavodoxin oxidoreductase family protein

GO Terms: GO:0016903

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3347

Tuberculist Genomic Region

Displaying 1 - 22 of 22

Motifs

Motif 1: e-value: 110 e-value: 600

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0030

Transcriptional regulator, GntR family
 down-regulates -0.11

DVU0030

DVU0525

Transcriptional regulator, MarR family
 down-regulates -0.20

DVU0525

DVU0596

DNA-binding response regulator LytR
 down-regulates -0.24

DVU0596

DVU1674

Transcriptional regulator, putative
 down-regulates -0.11

DVU1674

DVU1759

Molybdenum-binding protein, HTH domain
 down-regulates -0.14

DVU1759

DVU2251

DNA-binding protein
 up-regulates 0.16

DVU2251

DVU2532

Transcriptional regulator, MerR family
 up-regulates 0.22

DVU2532

DVU2956

Sigma-54 dependent transcriptional regulator
 down-regulates -0.10

DVU2956

DVU3167

Heme biosynthesis protein, putative
 up-regulates 0.11

DVU3167

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006790 sulfur compound metabolic process 4 0.02 1 0.0216
BP GO:0044272 sulfur compound biosynthetic process 4 0.02 1 0.0216
BP GO:0009084 glutamine family amino acid biosynthetic... 6 0.03 1 0.0323
BP GO:0009064 glutamine family amino acid metabolic pr... 9 0.05 1 0.0483
BP GO:0009108 coenzyme biosynthetic process 9 0.05 1 0.0483
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005887 integral component of plasma membrane 9 0.02 1 0.0230
CC GO:0031226 intrinsic component of plasma membrane 9 0.02 1 0.0230
CC GO:0044459 plasma membrane part 16 0.04 1 0.0410
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016814 hydrolase activity, acting on carbon-nit... 3 0.04 1 0.0370
MF GO:0051536 iron-sulfur cluster binding 110 1.37 4 0.0420
MF GO:0051540 metal cluster binding 110 1.37 4 0.0420
MF GO:0016491 oxidoreductase activity 68 0.85 3 0.0490
MF GO:0016597 amino acid binding 4 0.05 1 0.0490

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