Desulfovibrio vulgaris Hildenborough Module 233 Residual: 0.49 | Syntrophy Portal

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Summary

Residual: 0.49 Score: -44.189 version: dvh_cmonkey_11_Mar_02

Members

DVU0618 Uncharacterized protein Details for DVU0618 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0618 Tuberculist Genomic Region	DVU1480 Conserved domain protein Details for DVU1480 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1480 Tuberculist Genomic Region
DVU1477 Uncharacterized protein Details for DVU1477 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1477 Tuberculist Genomic Region	DVU1520 Uncharacterized protein Details for DVU1520 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1520 Tuberculist Genomic Region
DVU1705 Type I restriction-modification enzyme, S subunit Details for DVU1705 - Type I restriction-modification enzyme, S subunit GO Terms: GO:0003677, GO:0006304 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1705 Tuberculist Genomic Region	DVU1521 Uncharacterized protein Details for DVU1521 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1521 Tuberculist Genomic Region
DVU1706 Uncharacterized protein Details for DVU1706 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1706 Tuberculist Genomic Region	DVU1711 Uncharacterized protein Details for DVU1711 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1711 Tuberculist Genomic Region
DVU1734 Uncharacterized protein Details for DVU1734 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1734 Tuberculist Genomic Region	DVU1745 DNA-binding protein Details for DVU1745 - DNA-binding protein GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1745 Tuberculist Genomic Region
DVU2180 Uncharacterized protein Details for DVU2180 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2180 Tuberculist Genomic Region	DVU2178 ISDvu2, transposase OrfB Details for DVU2178 - ISDvu2, transposase OrfB GO Terms: GO:0015074, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2178 Tuberculist Genomic Region
DVU2717 Uncharacterized protein Details for DVU2717 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2717 Tuberculist Genomic Region	DVU2709 Uncharacterized protein Details for DVU2709 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2709 Tuberculist Genomic Region
DVU2718 Uncharacterized protein Details for DVU2718 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2718 Tuberculist Genomic Region	DVUA0018 Uncharacterized protein Details for DVUA0018 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0018 Tuberculist Genomic Region
DVU0570 Uncharacterized protein Details for DVU0570 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0570 Tuberculist Genomic Region	DVUA0019 Type II DNA modification methyltransferase, putative Details for DVUA0019 - Type II DNA modification methyltransferase, putative GO Terms: GO:0003677, GO:0006304, GO:0008168 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0019 Tuberculist Genomic Region
DVU1427 Response regulator Details for DVU1427 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1427 Tuberculist Genomic Region	DVUA0020 Type II restriction endonuclease, putative Details for DVUA0020 - Type II restriction endonuclease, putative GO Terms: GO:0003677, GO:0009307, GO:0009036 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0020 Tuberculist Genomic Region
DVU1478 Uncharacterized protein Details for DVU1478 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1478 Tuberculist Genomic Region	DVUA0026 Uncharacterized protein Details for DVUA0026 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0026 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.00041 Motif 2:

e-value: 0.00000087

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU2036 Helix-turn-helix protein, CopG family	up-regulates	0.18	DVU2036
DVU2106 Sigma-54 dependent transcriptional regulator	up-regulates	0.20	DVU2106
DVU2686 Peptidase, S24 family	up-regulates	0.20	DVU2686
DVU2799 Transcriptional regulator, MarR family	up-regulates	0.12	DVU2799
DVU2836 Uncharacterized protein	up-regulates	0.15	DVU2836
DVU3023 Sigma-54 dependent DNA-binding response regulator	down-regulates	-0.16	DVU3023

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003677	DNA binding	159	0.50	4	0.0002
MF	GO:0003676	nucleic acid binding	222	0.69	4	0.0009
MF	GO:0043565	sequence-specific DNA binding	15	0.05	1	0.0461

Essentiality

Comments

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