Desulfovibrio vulgaris Hildenborough Module 257 Residual: 0.32

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Summary

Residual: 0.32 Score: -104.03 version: dvh_cmonkey_11_Mar_02

Members

DVU0474 ISDvu4, transposase

Details for DVU0474 - ISDvu4, transposase

GO Terms: GO:0003677, GO:0015074

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0474

Tuberculist Genomic Region

DVU2097 Transcriptional regulator, putative

Details for DVU2097 - Transcriptional regulator, putative

GO Terms: GO:0003677, GO:0005622, GO:0003700, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2097

Tuberculist Genomic Region

DVUA0008 Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, putative

Details for DVUA0008 - Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, putative

GO Terms: GO:0009399, GO:0016163

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0008

Tuberculist Genomic Region

DVUA0014 Nitrogen regulatory protein P-II

Details for DVUA0014 - Nitrogen regulatory protein P-II

GO Terms: GO:0030234, GO:0006808

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0014

Tuberculist Genomic Region

DVUA0037 Sugar transferase domain protein

Details for DVUA0037 - Sugar transferase domain protein

GO Terms: GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0037

Tuberculist Genomic Region

DVUA0045 Aminotransferase, DegT/DnrJ/EryC1/StrS family

Details for DVUA0045 - Aminotransferase, DegT/DnrJ/EryC1/StrS family

GO Terms: GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0045

Tuberculist Genomic Region

DVUA0039 Chain length determinant family protein

Details for DVUA0039 - Chain length determinant family protein

GO Terms: GO:0009103, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0039

Tuberculist Genomic Region

DVUA0056 Uncharacterized protein

Details for DVUA0056 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0056

Tuberculist Genomic Region

DVUA0041 Conserved domain protein

Details for DVUA0041 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0041

Tuberculist Genomic Region

DVUA0062 Conserved domain protein

Details for DVUA0062 - Conserved domain protein

GO Terms: GO:0005524, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0062

Tuberculist Genomic Region

DVUA0065 Histidine kinase

Details for DVUA0065 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0065

Tuberculist Genomic Region

DVUA0063 Orn/DAP/Arg family decarboxylase

Details for DVUA0063 - Orn/DAP/Arg family decarboxylase

GO Terms: GO:0016831

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0063

Tuberculist Genomic Region

DVUA0090 Membrane protein, putative

Details for DVUA0090 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0090

Tuberculist Genomic Region

Displaying 1 - 13 of 13

Motifs

Motif 1: e-value: 420 e-value: 2800

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0063

Transcriptional regulator, MarR family
 up-regulates 0.14

DVU0063

DVU0525

Transcriptional regulator, MarR family
 down-regulates -0.18

DVU0525

DVU0606

Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family
 up-regulates 0.12

DVU0606

DVU0629

Transcriptional regulator, TetR family
 up-regulates 0.12

DVU0629

DVU0936

Uncharacterized protein
 down-regulates -0.15

DVU0936

DVU1402

Transcriptional regulator, LysR family
 up-regulates 0.24

DVU1402

DVU2111

Transcriptional regulator, LysR family
 down-regulates -0.10

DVU2111

DVU2582

Transcriptional regulator, TetR family
 up-regulates 0.16

DVU2582

DVU2802

Transcriptional regulator, GntR family
 up-regulates 0.17

DVU2802

DVU3381

Transcriptional regulatory protein zraR
 up-regulates 0.13

DVU3381

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0008653 lipopolysaccharide metabolic process 3 0.02 1 0.0160
BP GO:0009103 lipopolysaccharide biosynthetic process 3 0.02 1 0.0160
BP GO:0071941 nitrogen cycle metabolic process 3 0.02 1 0.0160
BP GO:0000271 polysaccharide biosynthetic process 7 0.04 1 0.0380
BP GO:0005976 polysaccharide metabolic process 7 0.04 1 0.0380
BP GO:0033692 cellular polysaccharide biosynthetic pro... 7 0.04 1 0.0380
BP GO:0034637 cellular carbohydrate biosynthetic proce... 7 0.04 1 0.0380
BP GO:0044264 cellular polysaccharide metabolic proces... 7 0.04 1 0.0380
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016831 carboxy-lyase activity 6 0.03 1 0.0320
MF GO:0030234 enzyme regulator activity 6 0.03 1 0.0320

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