Desulfovibrio vulgaris Hildenborough Module 276 Residual: 0.37 | Syntrophy Portal

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Summary

Residual: 0.37 Score: -82.4206 version: dvh_cmonkey_11_Mar_02

Members

DVU0215 Tail protein, putative Details for DVU0215 - Tail protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0215 Tuberculist Genomic Region	DVU2710 Uncharacterized protein Details for DVU2710 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2710 Tuberculist Genomic Region
DVUA0007 Nitrogenase cofactor biosynthesis protein NifB Details for DVUA0007 - Nitrogenase cofactor biosynthesis protein NifB GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0007 Tuberculist Genomic Region	DVU2711 Major head subunit, putative Details for DVU2711 - Major head subunit, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2711 Tuberculist Genomic Region
DVUA0010 Ferredoxin, 2fe-2s Details for DVUA0010 - Ferredoxin, 2fe-2s GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0010 Tuberculist Genomic Region	DVU2713 Uncharacterized protein Details for DVU2713 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2713 Tuberculist Genomic Region
DVUA0013 Nitrogen regulatory protein P-II Details for DVUA0013 - Nitrogen regulatory protein P-II GO Terms: GO:0030234, GO:0006808, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0013 Tuberculist Genomic Region	DVU2715 Uncharacterized protein Details for DVU2715 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2715 Tuberculist Genomic Region
DVU1164 Formamidase Details for DVU1164 - Formamidase GO Terms: GO:0004328, GO:0006807 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1164 Tuberculist Genomic Region	DVUA0009 Nitrogenase MoFe cofactor biosynthesis protein NifE domain protein Details for DVUA0009 - Nitrogenase MoFe cofactor biosynthesis protein NifE domain protein GO Terms: GO:0009399, GO:0016163, GO:0006461 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0009 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 690 Motif 2:

e-value: 2600

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0230 Transcriptional regulator cII, putative	up-regulates	0.16	DVU0230
DVU0679 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.15	DVU0679
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.15	DVU2114
DVU2588 DNA-binding response regulator	up-regulates	0.16	DVU2588
[field_regulator_taxonomy_regulat_1]	up-regulates	12.60	Oxygen

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0071941	nitrogen cycle metabolic process	3	0.01	1	0.0081

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016811	hydrolase activity, acting on carbon-nit...	4	0.01	1	0.0093
MF	GO:0030234	enzyme regulator activity	6	0.01	1	0.0140
MF	GO:0016810	hydrolase activity, acting on carbon-nit...	9	0.02	1	0.0209

Essentiality

Comments

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