Desulfovibrio vulgaris Hildenborough Module 281 Residual: 0.49 | Syntrophy Portal

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Summary

Residual: 0.49 Score: -33.6412 version: dvh_cmonkey_11_Mar_02

Members

DVU0234 Uncharacterized protein Details for DVU0234 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0234 Tuberculist Genomic Region	DVU0597 Histidine kinase Details for DVU0597 - Histidine kinase GO Terms: GO:0071555, GO:0016021, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0597 Tuberculist Genomic Region
DVU0235 Uncharacterized protein Details for DVU0235 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0235 Tuberculist Genomic Region	DVU0600 L-lactate dehydrogenase Details for DVU0600 - L-lactate dehydrogenase GO Terms: GO:0004459, GO:0044262, GO:0005737, GO:0006096 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0600 Tuberculist Genomic Region
DVU0025 Histidine kinase Details for DVU0025 - Histidine kinase GO Terms: GO:0005524, GO:0016020, GO:0000155, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0025 Tuberculist Genomic Region	DVU0601 Phenylacetic acid degradation protein PaaI Details for DVU0601 - Phenylacetic acid degradation protein PaaI GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0601 Tuberculist Genomic Region
DVU0233 Uncharacterized protein Details for DVU0233 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0233 Tuberculist Genomic Region	DVU1418 Histidine kinase Details for DVU1418 - Histidine kinase GO Terms: GO:0005524, GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1418 Tuberculist Genomic Region
DVU0370 Uncharacterized protein Details for DVU0370 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0370 Tuberculist Genomic Region	DVU2414 Uncharacterized protein Details for DVU2414 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2414 Tuberculist Genomic Region
DVU0577 Formate dehydrogenase formation protein FdhE, putative Details for DVU0577 - Formate dehydrogenase formation protein FdhE, putative GO Terms: GO:0005737 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0577 Tuberculist Genomic Region	DVU2588 DNA-binding response regulator Details for DVU2588 - DNA-binding response regulator GO Terms: GO:0003677, GO:0000160, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2588 Tuberculist Genomic Region
DVU0578 Formate dehydrogenase accessory protein FdhD, putative Details for DVU0578 - Formate dehydrogenase accessory protein FdhD, putative GO Terms: GO:0008863, GO:0009326 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0578 Tuberculist Genomic Region	DVU3036 Uncharacterized protein Details for DVU3036 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3036 Tuberculist Genomic Region
DVU0579 Molybdenum cofactor guanylyltransferase Details for DVU0579 - Molybdenum cofactor guanylyltransferase GO Terms: GO:0005525, GO:0006777, GO:0005737, GO:0046872, GO:0061603 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0579 Tuberculist Genomic Region	DVU3269 Sensory box histidine kinase/response regulator Details for DVU3269 - Sensory box histidine kinase/response regulator GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3269 Tuberculist Genomic Region
DVU0580 Cyclic pyranopterin monophosphate synthase Details for DVU0580 - Cyclic pyranopterin monophosphate synthase GO Terms: GO:0051539, GO:0005525, GO:0006777, GO:0061597, GO:0046872, GO:0019008 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0580 Tuberculist Genomic Region	DVU3381 Transcriptional regulatory protein zraR Details for DVU3381 - Transcriptional regulatory protein zraR GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3381 Tuberculist Genomic Region
DVU0596 DNA-binding response regulator LytR Details for DVU0596 - DNA-binding response regulator LytR GO Terms: GO:0003677, GO:0000160, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0596 Tuberculist Genomic Region	DVU3382 Histidine kinase Details for DVU3382 - Histidine kinase GO Terms: GO:0005524, GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3382 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 7.1 Motif 2:

e-value: 28000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0744 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.11	DVU0744
DVU1402 Transcriptional regulator, LysR family	up-regulates	0.29	DVU1402
DVU2547 Transcriptional regulator, putative	up-regulates	0.24	DVU2547

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0071555	cell wall organization	5	0.01	1	0.0140
BP	GO:0071554	cell wall organization or biogenesis	7	0.02	1	0.0190
BP	GO:0045229	external encapsulating structure organiz...	9	0.02	1	0.0240

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016620	oxidoreductase activity, acting on the a...	3	0.02	1	0.0233

Essentiality

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