Desulfovibrio vulgaris Hildenborough Module 297 Residual: 0.43

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Summary

Residual: 0.43 Score: -55.5783 version: dvh_cmonkey_11_Mar_02

Members

DVU0835 50S ribosomal protein L19

Details for DVU0835 - 50S ribosomal protein L19

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0835

Tuberculist Genomic Region

DVU1794 Uncharacterized protein

Details for DVU1794 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1794

Tuberculist Genomic Region

DVU0839 30S ribosomal protein S16

Details for DVU0839 - 30S ribosomal protein S16

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0839

Tuberculist Genomic Region

DVU1795 DNA-binding protein HU

Details for DVU1795 - DNA-binding protein HU

GO Terms: GO:0003677, GO:0030261

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1795

Tuberculist Genomic Region

DVU0927 50S ribosomal protein L21

Details for DVU0927 - 50S ribosomal protein L21

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0927

Tuberculist Genomic Region

DVU1820 Preprotein translocase, YajC subunit

Details for DVU1820 - Preprotein translocase, YajC subunit

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1820

Tuberculist Genomic Region

DVU0928 50S ribosomal protein L27

Details for DVU0928 - 50S ribosomal protein L27

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0928

Tuberculist Genomic Region

DVU1864 DNA-binding protein HU, beta subunit, putative

Details for DVU1864 - DNA-binding protein HU, beta subunit, putative

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1864

Tuberculist Genomic Region

DVU1301 Uncharacterized protein

Details for DVU1301 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1301

Tuberculist Genomic Region

DVU1896 30S ribosomal protein S20

Details for DVU1896 - 30S ribosomal protein S20

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1896

Tuberculist Genomic Region

DVU1334 Trigger factor

Details for DVU1334 - Trigger factor

GO Terms: GO:0007049, GO:0051301, GO:0005737, GO:0003755, GO:0006457, GO:0015031

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1334

Tuberculist Genomic Region

DVU2150 RNA polymerase-binding transcription factor DksA

Details for DVU2150 - RNA polymerase-binding transcription factor DksA

GO Terms: GO:0005737, GO:0010468, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2150

Tuberculist Genomic Region

DVU1537 Lipoprotein, putative

Details for DVU1537 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1537

Tuberculist Genomic Region

DVU2912 50S ribosomal protein L31

Details for DVU2912 - 50S ribosomal protein L31

GO Terms: GO:0046872, GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2912

Tuberculist Genomic Region

DVU1676 Preprotein translocase, SecG subunit

Details for DVU1676 - Preprotein translocase, SecG subunit

GO Terms: GO:0015450, GO:0016021, GO:0009306

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1676

Tuberculist Genomic Region

DVU2920 Elongation factor Tu

Details for DVU2920 - Elongation factor Tu

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2920

Tuberculist Genomic Region

DVU1792 30S ribosomal protein S21

Details for DVU1792 - 30S ribosomal protein S21

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1792

Tuberculist Genomic Region

DVU2925 50S ribosomal protein L1

Details for DVU2925 - 50S ribosomal protein L1

GO Terms: GO:0015934, GO:0019843, GO:0006417, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2925

Tuberculist Genomic Region

DVU1793 Uncharacterized protein

Details for DVU1793 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1793

Tuberculist Genomic Region

Displaying 1 - 19 of 19

Motifs

Motif 1: e-value: 510 e-value: 1300

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.12

DVU0118

DVU0744

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.17

DVU0744

DVU1083

Phosphate regulon transcriptional regulator PhoB
 down-regulates -0.12

DVU1083

DVU1402

Transcriptional regulator, LysR family
 down-regulates -0.14

DVU1402

DVU2275

Sigma-54 dependent transcriptional regulator
 up-regulates 0.19

DVU2275

DVU2423

Transcriptional regulator, putative
 down-regulates -0.29

DVU2423

DVU3084

Transcriptional regulator, putative
 up-regulates 0.17

DVU3084

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0007049 cell cycle 9 0.02 1 0.0240
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0043226 organelle 48 0.73 5 0.0001
CC GO:0043228 non-membrane-bounded organelle 48 0.73 5 0.0001
CC GO:0005622 intracellular 104 1.59 6 0.0003
CC GO:0044424 intracellular part 104 1.59 6 0.0003
CC GO:0005623 cell 145 2.21 6 0.0024
CC GO:0044464 cell part 145 2.21 6 0.0024
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 27 0.15 2 0.0084
MF GO:0003676 nucleic acid binding 222 1.21 4 0.0199
MF GO:0008320 protein transmembrane transporter activi... 4 0.02 1 0.0217
MF GO:0015450 P-P-bond-hydrolysis-driven protein trans... 4 0.02 1 0.0217
MF GO:0022884 macromolecule transmembrane transporter ... 4 0.02 1 0.0217
MF GO:0008565 protein transporter activity 5 0.03 1 0.0271
MF GO:0015399 primary active transmembrane transporter... 5 0.03 1 0.0271
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane... 5 0.03 1 0.0271
MF GO:0003723 RNA binding 54 0.30 2 0.0320

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