Desulfovibrio vulgaris Hildenborough Module 344 Residual: 0.46

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Summary

Residual: 0.46 Score: -39.6489 version: dvh_cmonkey_11_Mar_02

Members

DVU0014 Translation initiation factor IF-1 1

Details for DVU0014 - Translation initiation factor IF-1 1

GO Terms: GO:0005737, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0014

Tuberculist Genomic Region

DVU1290 Nitrate reductase, gamma subunit, putative

Details for DVU1290 - Nitrate reductase, gamma subunit, putative

GO Terms: GO:0008940, GO:0009325

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1290

Tuberculist Genomic Region

DVU0764 DNA-binding protein HU

Details for DVU0764 - DNA-binding protein HU

GO Terms: GO:0003677, GO:0030261

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0764

Tuberculist Genomic Region

DVU1323 Protein translocase subunit SecY

Details for DVU1323 - Protein translocase subunit SecY

GO Terms: GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0006605, GO:0043952

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1323

Tuberculist Genomic Region

DVU0784 Uncharacterized protein

Details for DVU0784 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0784

Tuberculist Genomic Region

DVU2032 ERF family protein

Details for DVU2032 - ERF family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2032

Tuberculist Genomic Region

DVU0841 Aspartate aminotransferase, putative

Details for DVU0841 - Aspartate aminotransferase, putative

GO Terms: GO:0009058, GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0841

Tuberculist Genomic Region

DVU2033 Uncharacterized protein

Details for DVU2033 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2033

Tuberculist Genomic Region

DVU0968 Amino acid ABC transporter, ATP-binding protein

Details for DVU0968 - Amino acid ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0968

Tuberculist Genomic Region

DVU2035 Plasmid stabilization system family protein

Details for DVU2035 - Plasmid stabilization system family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2035

Tuberculist Genomic Region

DVU1008 Uncharacterized protein

Details for DVU1008 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1008

Tuberculist Genomic Region

DVU2682 DedA family protein

Details for DVU2682 - DedA family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2682

Tuberculist Genomic Region

DVU1025 Uracil phosphoribosyltransferase

Details for DVU1025 - Uracil phosphoribosyltransferase

GO Terms: GO:0005525, GO:0044206, GO:0000287, GO:0004845, GO:0006223

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1025

Tuberculist Genomic Region

DVU2696 Uncharacterized protein

Details for DVU2696 - Uncharacterized protein

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2696

Tuberculist Genomic Region

DVU1026 Uracil permease

Details for DVU1026 - Uracil permease

GO Terms: GO:0016021, GO:0015210

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1026

Tuberculist Genomic Region

DVU2697 Uncharacterized protein

Details for DVU2697 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2697

Tuberculist Genomic Region

DVU1092 Transporter

Details for DVU1092 - Transporter

GO Terms: GO:0016021, GO:0005328

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1092

Tuberculist Genomic Region

DVU2901 Aspartate carbamoyltransferase

Details for DVU2901 - Aspartate carbamoyltransferase

GO Terms: GO:0044205, GO:0006207, GO:0016597, GO:0004070, GO:0006520

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2901

Tuberculist Genomic Region

DVU1260 Outer membrane protein P1, putative

Details for DVU1260 - Outer membrane protein P1, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1260

Tuberculist Genomic Region

DVU3210 Threonine synthase

Details for DVU3210 - Threonine synthase

GO Terms: GO:0046872, GO:0004795

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3210

Tuberculist Genomic Region

Displaying 1 - 20 of 20

Motifs

Motif 1: e-value: 9.8 e-value: 1100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU2195

Uncharacterized protein
 down-regulates -0.20

DVU2195

DVU2423

Transcriptional regulator, putative
 down-regulates -0.17

DVU2423

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.13

DVU3142

DVU3381

Transcriptional regulatory protein zraR
 down-regulates -0.13

DVU3381

DVUA0151

DNA-binding protein, putative
 down-regulates -0.10

DVUA0151

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006222 UMP biosynthetic process 6 0.03 1 0.0320
BP GO:0009173 pyrimidine ribonucleoside monophosphate ... 6 0.03 1 0.0320
BP GO:0009174 pyrimidine ribonucleoside monophosphate ... 6 0.03 1 0.0320
BP GO:0044205 'de novo' UMP biosynthetic process 6 0.03 1 0.0320
BP GO:0046049 UMP metabolic process 6 0.03 1 0.0320
BP GO:0009129 pyrimidine nucleoside monophosphate meta... 7 0.04 1 0.0380
BP GO:0009130 pyrimidine nucleoside monophosphate bios... 7 0.04 1 0.0380
BP GO:0006213 pyrimidine nucleoside metabolic process 8 0.04 1 0.0430
BP GO:0009218 pyrimidine ribonucleotide metabolic proc... 8 0.04 1 0.0430
BP GO:0009220 pyrimidine ribonucleotide biosynthetic p... 8 0.04 1 0.0430
BP GO:0046131 pyrimidine ribonucleoside metabolic proc... 8 0.04 1 0.0430
BP GO:0046132 pyrimidine ribonucleoside biosynthetic p... 8 0.04 1 0.0430
BP GO:0046134 pyrimidine nucleoside biosynthetic proce... 8 0.04 1 0.0430
BP GO:0006220 pyrimidine nucleotide metabolic process 9 0.05 1 0.0480
BP GO:0006221 pyrimidine nucleotide biosynthetic proce... 9 0.05 1 0.0480

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